Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ACEYXE_RS11690 Genome accession   NZ_CP169521
Coordinates   2398020..2398355 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain SZ-T8     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2393020..2403355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEYXE_RS11670 (ACEYXE_11670) gcvT 2393626..2394726 (-) 1101 WP_012117974.1 glycine cleavage system aminomethyltransferase GcvT -
  ACEYXE_RS11675 (ACEYXE_11675) - 2395150..2396820 (+) 1671 WP_012117975.1 DEAD/DEAH box helicase -
  ACEYXE_RS11680 (ACEYXE_11680) - 2396842..2397636 (+) 795 WP_012117976.1 YqhG family protein -
  ACEYXE_RS11685 (ACEYXE_11685) sinI 2397813..2397986 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  ACEYXE_RS11690 (ACEYXE_11690) sinR 2398020..2398355 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  ACEYXE_RS11695 (ACEYXE_11695) tasA 2398403..2399188 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  ACEYXE_RS11700 (ACEYXE_11700) sipW 2399253..2399837 (-) 585 WP_012117977.1 signal peptidase I SipW -
  ACEYXE_RS11705 (ACEYXE_11705) tapA 2399809..2400480 (-) 672 WP_012117978.1 amyloid fiber anchoring/assembly protein TapA -
  ACEYXE_RS11710 (ACEYXE_11710) - 2400739..2401068 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  ACEYXE_RS11715 (ACEYXE_11715) - 2401108..2401287 (-) 180 WP_003153093.1 YqzE family protein -
  ACEYXE_RS11720 (ACEYXE_11720) comGG 2401344..2401721 (-) 378 WP_012117980.1 competence type IV pilus minor pilin ComGG Machinery gene
  ACEYXE_RS11725 (ACEYXE_11725) comGF 2401722..2402222 (-) 501 WP_012117981.1 competence type IV pilus minor pilin ComGF -
  ACEYXE_RS11730 (ACEYXE_11730) comGE 2402131..2402445 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  ACEYXE_RS11735 (ACEYXE_11735) comGD 2402429..2402866 (-) 438 WP_012117983.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACEYXE_RS11740 (ACEYXE_11740) comGC 2402856..2403164 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=1051730 ACEYXE_RS11690 WP_003153104.1 2398020..2398355(+) (sinR) [Bacillus velezensis strain SZ-T8]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1051730 ACEYXE_RS11690 WP_003153104.1 2398020..2398355(+) (sinR) [Bacillus velezensis strain SZ-T8]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment