Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   O1Q82_RS09205 Genome accession   NZ_CP169367
Coordinates   1952220..1953620 (+) Length   466 a.a.
NCBI ID   WP_386687364.1    Uniprot ID   -
Organism   Lonepinella sp. MS14437     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1947220..1958620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1Q82_RS09180 (O1Q82_01832) - 1947234..1949831 (-) 2598 WP_386687354.1 penicillin-binding protein 1A -
  O1Q82_RS09185 (O1Q82_01833) - 1949949..1950764 (+) 816 WP_386687356.1 hypothetical protein -
  O1Q82_RS09190 (O1Q82_01834) - 1950754..1951302 (+) 549 WP_386687358.1 hypothetical protein -
  O1Q82_RS09195 (O1Q82_01835) - 1951280..1951819 (+) 540 WP_386687360.1 competence protein -
  O1Q82_RS09200 (O1Q82_01836) - 1951821..1952210 (+) 390 WP_386687362.1 hypothetical protein -
  O1Q82_RS09205 (O1Q82_01837) comE 1952220..1953620 (+) 1401 WP_386687364.1 type IV pilus secretin PilQ Machinery gene
  O1Q82_RS09210 (O1Q82_01838) acpP 1953659..1953889 (-) 231 WP_115637124.1 acyl carrier protein -
  O1Q82_RS09215 (O1Q82_01839) fabG 1954129..1954857 (-) 729 WP_386687367.1 3-oxoacyl-ACP reductase FabG -
  O1Q82_RS09220 (O1Q82_01840) fabD 1954878..1955819 (-) 942 WP_386687369.1 ACP S-malonyltransferase -
  O1Q82_RS09225 (O1Q82_01841) - 1955870..1956820 (-) 951 WP_386687371.1 beta-ketoacyl-ACP synthase III -
  O1Q82_RS09230 (O1Q82_01842) plsX 1956862..1957881 (-) 1020 WP_386687373.1 phosphate acyltransferase PlsX -
  O1Q82_RS09235 (O1Q82_01843) rpmF 1957903..1958073 (-) 171 WP_132302023.1 50S ribosomal protein L32 -
  O1Q82_RS09240 (O1Q82_01844) yceD 1958091..1958615 (-) 525 WP_386687375.1 23S rRNA accumulation protein YceD -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 50811.09 Da        Isoelectric Point: 6.3229

>NTDB_id=1051007 O1Q82_RS09205 WP_386687364.1 1952220..1953620(+) (comE) [Lonepinella sp. MS14437]
MNTLIYLLKFSLKCGLVWAIFFTSSYAEQPADLTFSIRLKQAPLVATLQQLALEQNANLIINDELTGTLSLQLENTTLDQ
LFHSVAKIKNLSLIKEKGIYYLNQENIAANDGAGDFPAMSDISAPVIEPLHTATLKLHFAKASEVMKSLTTGNGSLLSGE
GSISFDDRSNLLIVKDNAQSIKNIRKLVKELDKPIEQIAIEARIVTITDESLQELGGRWGLFDPTSSSHKVAGSLAANGF
SNIANNLNVNFGAVNTPAGSLALQVAKINGRLLDLELTALERENNVKIIASPKLLTTNKKSASIKQGTEIPYVSTNEKSG
SQNVEFREAVLGLEVTPHISQDNAILLDLIVSQNSPGAAVQSGEGEVITIDKQEINTQVFAKDGETIVLGGVFQDTLSKG
VDKVPVLGDIPVVKHLFRKQNDKHQKRELVIFVTPHILKQGQSIQDFEKSRQKDNKIVESRGKLIE

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=1051007 O1Q82_RS09205 WP_386687364.1 1952220..1953620(+) (comE) [Lonepinella sp. MS14437]
ATGAACACCTTGATTTATCTATTAAAGTTTAGCCTAAAGTGCGGTTTAGTTTGGGCTATTTTTTTCACCAGCAGTTATGC
TGAACAACCCGCTGATCTCACTTTTTCAATTCGATTAAAACAAGCACCATTGGTAGCCACCTTGCAACAGCTCGCATTAG
AACAAAATGCGAATTTAATTATCAATGATGAACTCACAGGAACCTTATCCTTGCAATTAGAAAATACCACGCTCGATCAA
TTATTTCACTCGGTGGCAAAAATTAAAAATCTCTCCCTGATTAAAGAAAAAGGAATTTATTATCTGAATCAAGAAAATAT
TGCAGCAAACGATGGGGCAGGTGATTTTCCTGCAATGTCTGATATATCTGCCCCAGTCATAGAACCACTACATACTGCAA
CCCTTAAATTGCATTTTGCTAAAGCCTCAGAAGTGATGAAATCTTTAACCACTGGGAATGGATCTTTATTGTCTGGGGAA
GGTAGCATTAGCTTTGATGATCGCAGTAATTTATTAATTGTGAAAGACAATGCTCAGTCCATTAAAAATATTCGCAAGTT
AGTCAAAGAGTTAGATAAACCGATAGAACAAATTGCGATTGAAGCTCGCATTGTTACCATTACAGATGAAAGTTTACAAG
AATTAGGGGGTCGTTGGGGACTATTTGATCCAACTAGCAGTTCACATAAAGTGGCAGGAAGCCTTGCTGCCAATGGTTTT
AGCAATATTGCAAATAATTTAAATGTGAATTTCGGAGCAGTCAATACCCCTGCTGGTTCGTTGGCATTACAAGTGGCAAA
AATTAATGGGCGTTTATTAGATTTAGAATTAACCGCACTTGAGCGAGAAAATAACGTCAAAATTATTGCCAGCCCCAAAT
TACTTACCACTAACAAAAAATCAGCGAGCATTAAACAAGGTACTGAAATCCCTTATGTATCGACCAACGAAAAAAGCGGT
TCGCAAAATGTAGAATTTCGTGAAGCCGTATTAGGCTTAGAAGTAACTCCCCATATTTCACAAGATAATGCCATTTTGTT
GGATCTTATCGTCAGCCAAAATTCGCCTGGAGCAGCAGTACAATCTGGTGAGGGAGAGGTGATCACCATTGATAAACAAG
AAATTAACACGCAAGTATTTGCCAAAGATGGCGAAACCATTGTATTAGGTGGTGTATTTCAAGATACATTAAGTAAAGGT
GTCGATAAAGTCCCTGTATTAGGTGATATTCCTGTGGTAAAACATCTATTCCGTAAACAAAATGATAAACACCAGAAACG
AGAATTAGTCATTTTTGTTACCCCACATATTTTAAAACAAGGACAATCTATTCAAGATTTTGAGAAGAGTCGCCAGAAAG
ACAACAAAATTGTCGAAAGCAGAGGGAAGTTAATTGAATAG

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(279-439)

Bacterial type II/III secretion system short domain (Secretin_N)

(133-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Haemophilus influenzae Rd KW20

64.172

94.635

0.607
  comE Haemophilus influenzae 86-028NP

63.492

94.635

0.601
  comE Glaesserella parasuis strain SC1401

55.257

87.768

0.485
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

40.471

91.202

0.369
  pilQ Vibrio cholerae strain A1552

40.471

91.202

0.369
  pilQ Vibrio campbellii strain DS40M4

39.394

92.06

0.363

Multiple sequence alignment