Detailed information
Bioinformatically predicted
Overview
| Name | comEA/comE1 | Type | Machinery gene |
| Locus tag | ABJR13_RS07950 | Genome accession | NZ_CP169360 |
| Coordinates | 1641070..1641408 (-) | Length | 112 a.a. |
| NCBI ID | WP_006251644.1 | Uniprot ID | A0A248ZWT2 |
| Organism | Mannheimia haemolytica strain Mh184.20180323.PV.C | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1636070..1646408
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABJR13_RS07935 (ABJR13_001588) | - | 1636072..1637541 (-) | 1470 | WP_040080587.1 | class I SAM-dependent DNA methyltransferase | - |
| ABJR13_RS07940 (ABJR13_001589) | hsdR | 1637589..1639940 (-) | 2352 | WP_006250003.1 | EcoAI/FtnUII family type I restriction enzme subunit R | - |
| ABJR13_RS07945 (ABJR13_001590) | asd | 1640012..1640905 (-) | 894 | WP_006251643.1 | archaetidylserine decarboxylase | - |
| ABJR13_RS07950 (ABJR13_001591) | comEA/comE1 | 1641070..1641408 (-) | 339 | WP_006251644.1 | ComEA family DNA-binding protein | Machinery gene |
| ABJR13_RS07955 (ABJR13_001592) | - | 1641701..1642972 (+) | 1272 | WP_040080586.1 | LysM-like peptidoglycan-binding domain-containing protein | - |
| ABJR13_RS07960 (ABJR13_001593) | - | 1643032..1643448 (+) | 417 | WP_020824267.1 | MliC family protein | - |
| ABJR13_RS07965 (ABJR13_001594) | waaF | 1643558..1644595 (+) | 1038 | WP_020824266.1 | lipopolysaccharide heptosyltransferase II | - |
| ABJR13_RS07970 (ABJR13_001595) | rfaC | 1644663..1645622 (+) | 960 | WP_006250332.1 | lipopolysaccharide heptosyltransferase RfaC | - |
| ABJR13_RS07975 (ABJR13_001596) | rpsL | 1645743..1646117 (+) | 375 | WP_005543325.1 | 30S ribosomal protein S12 | - |
Sequence
Protein
Download Length: 112 a.a. Molecular weight: 12111.91 Da Isoelectric Point: 10.0993
>NTDB_id=1050952 ABJR13_RS07950 WP_006251644.1 1641070..1641408(-) (comEA/comE1) [Mannheimia haemolytica strain Mh184.20180323.PV.C]
MKKIKQLGLTFLFGLNAMAFAQTPPTTMPVEQNAVTQPVQQTQITNANAVNINTASAAELQDKLVGIGQKKAQAIVDYRT
KNGNFKNIEQLAEVSGIGQATVEKNRANIILE
MKKIKQLGLTFLFGLNAMAFAQTPPTTMPVEQNAVTQPVQQTQITNANAVNINTASAAELQDKLVGIGQKKAQAIVDYRT
KNGNFKNIEQLAEVSGIGQATVEKNRANIILE
Nucleotide
Download Length: 339 bp
>NTDB_id=1050952 ABJR13_RS07950 WP_006251644.1 1641070..1641408(-) (comEA/comE1) [Mannheimia haemolytica strain Mh184.20180323.PV.C]
ATGAAGAAAATCAAACAACTTGGTCTAACATTCTTGTTTGGCTTAAATGCAATGGCTTTTGCCCAAACACCGCCAACTAC
AATGCCTGTTGAACAAAATGCAGTCACTCAACCCGTACAGCAAACACAAATCACCAACGCCAATGCGGTAAATATCAATA
CTGCTAGTGCTGCTGAATTGCAAGACAAGCTAGTGGGAATTGGGCAGAAAAAAGCTCAAGCGATTGTCGATTACCGTACT
AAAAACGGCAATTTTAAAAACATTGAGCAACTTGCTGAAGTCTCCGGAATTGGGCAAGCAACGGTAGAAAAAAATCGAGC
CAATATTATTTTAGAATAA
ATGAAGAAAATCAAACAACTTGGTCTAACATTCTTGTTTGGCTTAAATGCAATGGCTTTTGCCCAAACACCGCCAACTAC
AATGCCTGTTGAACAAAATGCAGTCACTCAACCCGTACAGCAAACACAAATCACCAACGCCAATGCGGTAAATATCAATA
CTGCTAGTGCTGCTGAATTGCAAGACAAGCTAGTGGGAATTGGGCAGAAAAAAGCTCAAGCGATTGTCGATTACCGTACT
AAAAACGGCAATTTTAAAAACATTGAGCAACTTGCTGAAGTCTCCGGAATTGGGCAAGCAACGGTAGAAAAAAATCGAGC
CAATATTATTTTAGAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
59.292 |
100 |
0.598 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
52.747 |
81.25 |
0.429 |
| comEA | Vibrio cholerae C6706 |
54.651 |
76.786 |
0.42 |
| comEA | Vibrio cholerae strain A1552 |
54.651 |
76.786 |
0.42 |