Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | CF65_RS09605 | Genome accession | NZ_CP007502 |
| Coordinates | 1997079..1998092 (-) | Length | 337 a.a. |
| NCBI ID | WP_005545577.1 | Uniprot ID | A0A142G245 |
| Organism | Aggregatibacter actinomycetemcomitans HK1651 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1992079..2003092
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CF65_RS09580 (CF65_02837) | ybgC | 1992633..1993037 (-) | 405 | WP_005545583.1 | tol-pal system-associated acyl-CoA thioesterase | - |
| CF65_RS09585 (CF65_02838) | ybgE | 1993153..1993431 (-) | 279 | WP_005587199.1 | cyd operon protein YbgE | - |
| CF65_RS10745 (CF65_02839) | - | 1993436..1993534 (-) | 99 | WP_019518193.1 | cytochrome bd oxidase small subunit, CydX/CbdX family | - |
| CF65_RS09590 (CF65_02840) | cydB | 1993546..1994682 (-) | 1137 | WP_005542295.1 | cytochrome d ubiquinol oxidase subunit II | - |
| CF65_RS09595 (CF65_02841) | - | 1994697..1996262 (-) | 1566 | WP_005545579.1 | cytochrome ubiquinol oxidase subunit I | - |
| CF65_RS09600 (CF65_02842) | - | 1996714..1997025 (+) | 312 | WP_005542297.1 | DUF5339 domain-containing protein | - |
| CF65_RS09605 (CF65_02844) | ruvB | 1997079..1998092 (-) | 1014 | WP_005545577.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| CF65_RS09610 (CF65_02845) | ruvA | 1998107..1998721 (-) | 615 | WP_005545575.1 | Holliday junction branch migration protein RuvA | - |
| CF65_RS09615 (CF65_02846) | ruvC | 1998785..1999357 (-) | 573 | WP_025298526.1 | crossover junction endodeoxyribonuclease RuvC | - |
| CF65_RS09620 (CF65_02847) | - | 1999413..1999823 (-) | 411 | WP_025298527.1 | hypothetical protein | - |
| CF65_RS09625 (CF65_02848) | - | 1999835..2000575 (-) | 741 | WP_005567678.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| CF65_RS09630 (CF65_02850) | nudB | 2000609..2001055 (-) | 447 | WP_005542305.1 | dihydroneopterin triphosphate diphosphatase | - |
| CF65_RS09635 (CF65_02853) | - | 2001161..2002429 (-) | 1269 | WP_005567675.1 | NRAMP family divalent metal transporter | - |
Sequence
Protein
Download Length: 337 a.a. Molecular weight: 37378.90 Da Isoelectric Point: 4.7954
>NTDB_id=105095 CF65_RS09605 WP_005545577.1 1997079..1998092(-) (ruvB) [Aggregatibacter actinomycetemcomitans HK1651]
MIEADRIISATAKLDEDVIDRAIRPKLLADYVGQPQVCEQMEIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYSVSDLTSIVSRSAVCLQLKINDTAAYEIARRSRGTPRIANRLLRRVRDYADVRNNG
MISEEIAKAALSMLDIDDAGFDYLDRKLLTAVLERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTSRGRIA
TLTTYRHFGIEKITRED
MIEADRIISATAKLDEDVIDRAIRPKLLADYVGQPQVCEQMEIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYSVSDLTSIVSRSAVCLQLKINDTAAYEIARRSRGTPRIANRLLRRVRDYADVRNNG
MISEEIAKAALSMLDIDDAGFDYLDRKLLTAVLERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTSRGRIA
TLTTYRHFGIEKITRED
Nucleotide
Download Length: 1014 bp
>NTDB_id=105095 CF65_RS09605 WP_005545577.1 1997079..1998092(-) (ruvB) [Aggregatibacter actinomycetemcomitans HK1651]
ATGATTGAAGCAGACAGAATTATCAGTGCGACGGCAAAATTAGACGAGGATGTTATCGATCGTGCCATTCGCCCGAAATT
GCTGGCGGATTATGTGGGGCAACCGCAGGTATGCGAGCAAATGGAGATTTTCATCAAGGCGGCAAAATTGCGTCAGGATG
CGTTGGATCATTTGCTGATTTTTGGCCCGCCGGGTTTGGGAAAAACCACCTTGGCAAATATTGTTGCCAATGAAATGGGC
GTAAATATTCGCACTACGTCAGGCCCCGTGCTGGAAAAAGCGGGGGATTTGGCGGCAATGTTGACCAATCTGGAGCCTCA
TGATGTGTTGTTTATTGATGAAATTCATCGTCTTTCTCCGGCGATTGAAGAAGTGCTTTATCCGGCAATGGAAGATTATC
AGCTTGATATTATGATTGGCGAAGGGCCGGCAGCGCGTTCTATTAAATTGGATTTACCTCCTTTTACGCTTATCGGTGCA
ACCACCCGTGCGGGCTCTTTAACCTCTCCGTTGCGCGATCGTTTTGGTATTGTGCAGCGTTTGGAATTTTATTCCGTGTC
GGATTTAACTTCTATTGTGTCCAGAAGTGCGGTCTGTTTACAGCTTAAAATTAACGATACAGCAGCTTATGAAATCGCCC
GCCGTTCTCGCGGCACGCCACGGATTGCCAATCGGTTATTACGTCGGGTGCGTGATTATGCTGATGTGCGTAACAATGGC
ATGATTAGTGAAGAGATTGCTAAAGCAGCGCTATCCATGCTGGATATTGATGATGCGGGGTTTGACTACTTAGACAGAAA
ATTGCTTACGGCAGTTTTGGAGCGCTTTGACGGTGGTCCGGTCGGTTTGGATAATTTGGCGGCGGCAATTGGGGAAGAGC
GGGATACCATTGAAGACGTATTGGAACCATACTTAATTCAACAGGGTTTTTTACAGCGAACCTCAAGGGGGCGAATTGCT
ACACTCACCACATATCGCCATTTTGGTATTGAGAAAATTACTCGCGAAGATTAA
ATGATTGAAGCAGACAGAATTATCAGTGCGACGGCAAAATTAGACGAGGATGTTATCGATCGTGCCATTCGCCCGAAATT
GCTGGCGGATTATGTGGGGCAACCGCAGGTATGCGAGCAAATGGAGATTTTCATCAAGGCGGCAAAATTGCGTCAGGATG
CGTTGGATCATTTGCTGATTTTTGGCCCGCCGGGTTTGGGAAAAACCACCTTGGCAAATATTGTTGCCAATGAAATGGGC
GTAAATATTCGCACTACGTCAGGCCCCGTGCTGGAAAAAGCGGGGGATTTGGCGGCAATGTTGACCAATCTGGAGCCTCA
TGATGTGTTGTTTATTGATGAAATTCATCGTCTTTCTCCGGCGATTGAAGAAGTGCTTTATCCGGCAATGGAAGATTATC
AGCTTGATATTATGATTGGCGAAGGGCCGGCAGCGCGTTCTATTAAATTGGATTTACCTCCTTTTACGCTTATCGGTGCA
ACCACCCGTGCGGGCTCTTTAACCTCTCCGTTGCGCGATCGTTTTGGTATTGTGCAGCGTTTGGAATTTTATTCCGTGTC
GGATTTAACTTCTATTGTGTCCAGAAGTGCGGTCTGTTTACAGCTTAAAATTAACGATACAGCAGCTTATGAAATCGCCC
GCCGTTCTCGCGGCACGCCACGGATTGCCAATCGGTTATTACGTCGGGTGCGTGATTATGCTGATGTGCGTAACAATGGC
ATGATTAGTGAAGAGATTGCTAAAGCAGCGCTATCCATGCTGGATATTGATGATGCGGGGTTTGACTACTTAGACAGAAA
ATTGCTTACGGCAGTTTTGGAGCGCTTTGACGGTGGTCCGGTCGGTTTGGATAATTTGGCGGCGGCAATTGGGGAAGAGC
GGGATACCATTGAAGACGTATTGGAACCATACTTAATTCAACAGGGTTTTTTACAGCGAACCTCAAGGGGGCGAATTGCT
ACACTCACCACATATCGCCATTTTGGTATTGAGAAAATTACTCGCGAAGATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
61.774 |
97.033 |
0.599 |
| ruvB | Streptococcus pneumoniae TIGR4 |
58.282 |
96.736 |
0.564 |
| ruvB | Streptococcus pneumoniae R6 |
58.282 |
96.736 |
0.564 |
| ruvB | Streptococcus pneumoniae D39 |
58.282 |
96.736 |
0.564 |
| ruvB | Helicobacter pylori 26695 |
55.987 |
91.691 |
0.513 |
| ruvB | Synechocystis sp. PCC 6803 |
55.016 |
91.691 |
0.504 |