Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ABJR18_RS04795 | Genome accession | NZ_CP169359 |
| Coordinates | 1017039..1017518 (-) | Length | 159 a.a. |
| NCBI ID | WP_006248401.1 | Uniprot ID | A0A249A0S4 |
| Organism | Mannheimia haemolytica strain Mh184.20180323.PV.D | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1012039..1022518
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABJR18_RS04770 (ABJR18_000955) | yacG | 1012941..1013126 (-) | 186 | WP_006248406.1 | DNA gyrase inhibitor YacG | - |
| ABJR18_RS04775 (ABJR18_000956) | coaE | 1013108..1013743 (-) | 636 | WP_020831305.1 | dephospho-CoA kinase | - |
| ABJR18_RS04780 (ABJR18_000957) | - | 1013779..1014435 (-) | 657 | WP_006248404.1 | prepilin peptidase | - |
| ABJR18_RS04785 (ABJR18_000958) | pilC | 1014438..1015634 (-) | 1197 | WP_006248403.1 | type II secretion system F family protein | Machinery gene |
| ABJR18_RS04790 (ABJR18_000959) | pilB | 1015618..1017018 (-) | 1401 | WP_040080755.1 | GspE/PulE family protein | Machinery gene |
| ABJR18_RS04795 (ABJR18_000960) | pilA | 1017039..1017518 (-) | 480 | WP_006248401.1 | prepilin peptidase-dependent pilin | Machinery gene |
| ABJR18_RS04800 (ABJR18_000961) | radA | 1017699..1019078 (+) | 1380 | WP_040080753.1 | DNA repair protein RadA | Machinery gene |
| ABJR18_RS04805 (ABJR18_000962) | - | 1019133..1019363 (-) | 231 | WP_006248398.1 | YgjV family protein | - |
| ABJR18_RS04810 (ABJR18_000963) | folA | 1019483..1019977 (-) | 495 | WP_006248397.1 | type 3 dihydrofolate reductase | - |
| ABJR18_RS04815 (ABJR18_000964) | proB | 1020089..1021180 (+) | 1092 | WP_006251346.1 | glutamate 5-kinase | - |
| ABJR18_RS04820 (ABJR18_000965) | - | 1021180..1021944 (+) | 765 | WP_006248395.1 | TSUP family transporter | - |
Sequence
Protein
Download Length: 159 a.a. Molecular weight: 16841.15 Da Isoelectric Point: 8.7964
>NTDB_id=1050925 ABJR18_RS04795 WP_006248401.1 1017039..1017518(-) (pilA) [Mannheimia haemolytica strain Mh184.20180323.PV.D]
MQKIVHFRPLGIRQLHRAFTLIELMIVIAIIAILATIAIPSYNSYTQKAALSELLQASASYKSDVEVCIYNSGGLDNCSG
GTNGIQANKTSSNTTKYLNSIAVTKGVITVTGKGSLNGYGYTLTPSFSNNTISWTASCSGNDTSLFPANFCSTTVTPNG
MQKIVHFRPLGIRQLHRAFTLIELMIVIAIIAILATIAIPSYNSYTQKAALSELLQASASYKSDVEVCIYNSGGLDNCSG
GTNGIQANKTSSNTTKYLNSIAVTKGVITVTGKGSLNGYGYTLTPSFSNNTISWTASCSGNDTSLFPANFCSTTVTPNG
Nucleotide
Download Length: 480 bp
>NTDB_id=1050925 ABJR18_RS04795 WP_006248401.1 1017039..1017518(-) (pilA) [Mannheimia haemolytica strain Mh184.20180323.PV.D]
ATGCAAAAAATTGTACATTTTAGACCGCTTGGCATTCGCCAACTGCATCGGGCATTTACCCTCATTGAGTTGATGATCGT
GATTGCGATTATTGCCATTCTTGCCACTATTGCGATCCCTTCCTATAACTCATACACCCAAAAGGCGGCGTTATCGGAGT
TATTACAAGCATCTGCTTCGTATAAATCAGACGTTGAAGTCTGTATTTACAACAGTGGCGGGTTGGATAACTGCTCCGGT
GGCACGAATGGGATTCAGGCGAATAAAACCAGTAGTAATACCACTAAATACCTAAACTCAATTGCGGTAACAAAAGGCGT
GATTACGGTAACCGGCAAAGGCTCTCTGAATGGTTATGGCTATACCTTAACACCGTCGTTCTCAAATAATACGATTAGTT
GGACGGCAAGTTGTAGTGGCAATGATACGAGCCTATTTCCAGCTAATTTCTGTAGCACAACTGTTACACCAAACGGCTAA
ATGCAAAAAATTGTACATTTTAGACCGCTTGGCATTCGCCAACTGCATCGGGCATTTACCCTCATTGAGTTGATGATCGT
GATTGCGATTATTGCCATTCTTGCCACTATTGCGATCCCTTCCTATAACTCATACACCCAAAAGGCGGCGTTATCGGAGT
TATTACAAGCATCTGCTTCGTATAAATCAGACGTTGAAGTCTGTATTTACAACAGTGGCGGGTTGGATAACTGCTCCGGT
GGCACGAATGGGATTCAGGCGAATAAAACCAGTAGTAATACCACTAAATACCTAAACTCAATTGCGGTAACAAAAGGCGT
GATTACGGTAACCGGCAAAGGCTCTCTGAATGGTTATGGCTATACCTTAACACCGTCGTTCTCAAATAATACGATTAGTT
GGACGGCAAGTTGTAGTGGCAATGATACGAGCCTATTTCCAGCTAATTTCTGTAGCACAACTGTTACACCAAACGGCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Glaesserella parasuis strain SC1401 |
66.038 |
100 |
0.66 |
| pilA | Haemophilus influenzae 86-028NP |
56.429 |
88.05 |
0.497 |
| pilA | Haemophilus influenzae Rd KW20 |
54.93 |
89.308 |
0.491 |