Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ABJR15_RS04565 | Genome accession | NZ_CP169358 |
| Coordinates | 889567..890046 (+) | Length | 159 a.a. |
| NCBI ID | WP_006248401.1 | Uniprot ID | A0A249A0S4 |
| Organism | Mannheimia haemolytica strain Mh184.20180323.PV.E | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 884567..895046
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABJR15_RS04540 (ABJR15_000909) | - | 885142..885906 (-) | 765 | WP_006248395.1 | TSUP family transporter | - |
| ABJR15_RS04545 (ABJR15_000910) | proB | 885906..886997 (-) | 1092 | WP_006251346.1 | glutamate 5-kinase | - |
| ABJR15_RS04550 (ABJR15_000911) | folA | 887109..887602 (+) | 494 | Protein_868 | type 3 dihydrofolate reductase | - |
| ABJR15_RS04555 (ABJR15_000912) | - | 887722..887952 (+) | 231 | WP_006248398.1 | YgjV family protein | - |
| ABJR15_RS04560 (ABJR15_000913) | radA | 888007..889386 (-) | 1380 | WP_040080753.1 | DNA repair protein RadA | Machinery gene |
| ABJR15_RS04565 (ABJR15_000914) | pilA | 889567..890046 (+) | 480 | WP_006248401.1 | prepilin peptidase-dependent pilin | Machinery gene |
| ABJR15_RS04570 (ABJR15_000915) | pilB | 890067..891467 (+) | 1401 | WP_040080755.1 | GspE/PulE family protein | Machinery gene |
| ABJR15_RS04575 (ABJR15_000916) | pilC | 891451..892647 (+) | 1197 | WP_006248403.1 | type II secretion system F family protein | Machinery gene |
| ABJR15_RS04580 (ABJR15_000917) | - | 892650..893306 (+) | 657 | WP_006248404.1 | prepilin peptidase | - |
| ABJR15_RS04585 (ABJR15_000918) | coaE | 893342..893977 (+) | 636 | WP_020831305.1 | dephospho-CoA kinase | - |
| ABJR15_RS04590 (ABJR15_000919) | yacG | 893959..894144 (+) | 186 | WP_006248406.1 | DNA gyrase inhibitor YacG | - |
Sequence
Protein
Download Length: 159 a.a. Molecular weight: 16841.15 Da Isoelectric Point: 8.7964
>NTDB_id=1050904 ABJR15_RS04565 WP_006248401.1 889567..890046(+) (pilA) [Mannheimia haemolytica strain Mh184.20180323.PV.E]
MQKIVHFRPLGIRQLHRAFTLIELMIVIAIIAILATIAIPSYNSYTQKAALSELLQASASYKSDVEVCIYNSGGLDNCSG
GTNGIQANKTSSNTTKYLNSIAVTKGVITVTGKGSLNGYGYTLTPSFSNNTISWTASCSGNDTSLFPANFCSTTVTPNG
MQKIVHFRPLGIRQLHRAFTLIELMIVIAIIAILATIAIPSYNSYTQKAALSELLQASASYKSDVEVCIYNSGGLDNCSG
GTNGIQANKTSSNTTKYLNSIAVTKGVITVTGKGSLNGYGYTLTPSFSNNTISWTASCSGNDTSLFPANFCSTTVTPNG
Nucleotide
Download Length: 480 bp
>NTDB_id=1050904 ABJR15_RS04565 WP_006248401.1 889567..890046(+) (pilA) [Mannheimia haemolytica strain Mh184.20180323.PV.E]
ATGCAAAAAATTGTACATTTTAGACCGCTTGGCATTCGCCAACTGCATCGGGCATTTACCCTCATTGAGTTGATGATCGT
GATTGCGATTATTGCCATTCTTGCCACTATTGCGATCCCTTCCTATAACTCATACACCCAAAAGGCGGCGTTATCGGAGT
TATTACAAGCATCTGCTTCGTATAAATCAGACGTTGAAGTCTGTATTTACAACAGTGGCGGGTTGGATAACTGCTCCGGT
GGCACGAATGGGATTCAGGCGAATAAAACCAGTAGTAATACCACTAAATACCTAAACTCAATTGCGGTAACAAAAGGCGT
GATTACGGTAACCGGCAAAGGCTCTCTGAATGGTTATGGCTATACCTTAACACCGTCGTTCTCAAATAATACGATTAGTT
GGACGGCAAGTTGTAGTGGCAATGATACGAGCCTATTTCCAGCTAATTTCTGTAGCACAACTGTTACACCAAACGGCTAA
ATGCAAAAAATTGTACATTTTAGACCGCTTGGCATTCGCCAACTGCATCGGGCATTTACCCTCATTGAGTTGATGATCGT
GATTGCGATTATTGCCATTCTTGCCACTATTGCGATCCCTTCCTATAACTCATACACCCAAAAGGCGGCGTTATCGGAGT
TATTACAAGCATCTGCTTCGTATAAATCAGACGTTGAAGTCTGTATTTACAACAGTGGCGGGTTGGATAACTGCTCCGGT
GGCACGAATGGGATTCAGGCGAATAAAACCAGTAGTAATACCACTAAATACCTAAACTCAATTGCGGTAACAAAAGGCGT
GATTACGGTAACCGGCAAAGGCTCTCTGAATGGTTATGGCTATACCTTAACACCGTCGTTCTCAAATAATACGATTAGTT
GGACGGCAAGTTGTAGTGGCAATGATACGAGCCTATTTCCAGCTAATTTCTGTAGCACAACTGTTACACCAAACGGCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Glaesserella parasuis strain SC1401 |
66.038 |
100 |
0.66 |
| pilA | Haemophilus influenzae 86-028NP |
56.429 |
88.05 |
0.497 |
| pilA | Haemophilus influenzae Rd KW20 |
54.93 |
89.308 |
0.491 |