Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABJR15_RS04560 Genome accession   NZ_CP169358
Coordinates   888007..889386 (-) Length   459 a.a.
NCBI ID   WP_040080753.1    Uniprot ID   -
Organism   Mannheimia haemolytica strain Mh184.20180323.PV.E     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 883007..894386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABJR15_RS04530 (ABJR15_000907) - 883060..884310 (-) 1251 WP_040080752.1 multifunctional CCA addition/repair protein -
  ABJR15_RS04535 (ABJR15_000908) nth 884507..885139 (-) 633 WP_006248394.1 endonuclease III -
  ABJR15_RS04540 (ABJR15_000909) - 885142..885906 (-) 765 WP_006248395.1 TSUP family transporter -
  ABJR15_RS04545 (ABJR15_000910) proB 885906..886997 (-) 1092 WP_006251346.1 glutamate 5-kinase -
  ABJR15_RS04550 (ABJR15_000911) folA 887109..887602 (+) 494 Protein_868 type 3 dihydrofolate reductase -
  ABJR15_RS04555 (ABJR15_000912) - 887722..887952 (+) 231 WP_006248398.1 YgjV family protein -
  ABJR15_RS04560 (ABJR15_000913) radA 888007..889386 (-) 1380 WP_040080753.1 DNA repair protein RadA Machinery gene
  ABJR15_RS04565 (ABJR15_000914) pilA 889567..890046 (+) 480 WP_006248401.1 prepilin peptidase-dependent pilin Machinery gene
  ABJR15_RS04570 (ABJR15_000915) pilB 890067..891467 (+) 1401 WP_040080755.1 GspE/PulE family protein Machinery gene
  ABJR15_RS04575 (ABJR15_000916) pilC 891451..892647 (+) 1197 WP_006248403.1 type II secretion system F family protein Machinery gene
  ABJR15_RS04580 (ABJR15_000917) - 892650..893306 (+) 657 WP_006248404.1 prepilin peptidase -
  ABJR15_RS04585 (ABJR15_000918) coaE 893342..893977 (+) 636 WP_020831305.1 dephospho-CoA kinase -
  ABJR15_RS04590 (ABJR15_000919) yacG 893959..894144 (+) 186 WP_006248406.1 DNA gyrase inhibitor YacG -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49759.39 Da        Isoelectric Point: 8.1850

>NTDB_id=1050903 ABJR15_RS04560 WP_040080753.1 888007..889386(-) (radA) [Mannheimia haemolytica strain Mh184.20180323.PV.E]
MAKAPKTAYVCNDCGAEYSRWMGQCKECKAWNTISEVRLISSKEAAKSDRFSGYAGETSGKVQTLSDISLQEVPRFSSGF
NELDRVLGGGVVPGSAILIGGHPGAGKSTLLLQVMCGLAQHLPTLYVTGEESLQQVAMRANRLGLPTANLKMLSETSVEH
ICNIADQEKPKIMVIDSIQVMHLSDIQSSPGSVSQVRECASFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDASL
LLEGESDSRFRTLRSQKNRFGAVNELGVFAMTEQGLKEVKNPSAIFLSRSEEQTPGSSVMVLWEGTRPLLVEIQALVDHS
MLANPRRVAVGLDHNRLSLLLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALILALISSFRNRPLPQDLVIFGEVG
LAGEIRPVTSGQERISEAAKHGFKRAIIPHGNVPKKAIKDMQVFTVKKLSDALDILYNL

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=1050903 ABJR15_RS04560 WP_040080753.1 888007..889386(-) (radA) [Mannheimia haemolytica strain Mh184.20180323.PV.E]
ATGGCAAAAGCACCTAAAACCGCTTATGTTTGTAACGATTGCGGGGCTGAATATTCCCGTTGGATGGGGCAATGTAAGGA
ATGTAAGGCTTGGAATACCATCAGTGAAGTGCGGTTGATTTCCAGCAAAGAAGCGGCGAAATCTGACCGCTTTAGCGGCT
ATGCCGGTGAAACGTCAGGCAAAGTACAAACGCTGTCTGACATCAGCTTGCAGGAAGTGCCTCGCTTTAGCAGTGGCTTT
AACGAGCTGGATCGTGTACTCGGTGGCGGCGTAGTGCCGGGGTCAGCAATTCTGATCGGCGGTCACCCGGGGGCGGGGAA
AAGTACGTTATTACTGCAAGTAATGTGCGGTTTAGCCCAACATCTGCCAACGCTGTATGTCACCGGTGAAGAGTCGTTAC
AACAAGTTGCAATGCGGGCAAATCGCTTAGGCTTACCAACGGCAAATCTAAAAATGTTGTCTGAAACCTCTGTCGAGCAT
ATTTGCAATATTGCAGATCAAGAAAAGCCCAAAATTATGGTGATTGACTCGATTCAGGTGATGCACTTGTCGGATATTCA
GTCCTCACCCGGCAGTGTTTCACAAGTGCGTGAATGTGCATCTTTCCTTACCCGCTACGCCAAAACCCGCCAAGTGGCGA
TTATTATGGTTGGGCACGTCACTAAAGATGGCACGCTTGCCGGCCCGAAAGTGTTGGAACACGCCATCGATGCTTCCTTG
CTGTTAGAAGGCGAATCCGATTCCCGTTTCCGTACTTTGCGTAGCCAGAAAAATCGTTTTGGTGCCGTCAATGAATTGGG
CGTATTTGCGATGACCGAACAAGGGCTAAAAGAGGTTAAAAACCCATCTGCGATTTTTTTAAGCCGTAGCGAAGAGCAAA
CGCCGGGCAGTTCGGTGATGGTGTTATGGGAAGGAACACGCCCATTGTTGGTTGAAATTCAAGCCTTAGTCGATCACTCA
ATGCTGGCAAACCCTCGCCGTGTGGCGGTTGGCTTAGATCATAACCGTTTATCGCTATTACTTGCGGTGCTACACCGACA
CGGTGGCTTGCAGATGTCGGATCAAGATGTGTTTGTAAATGTGGTCGGTGGGGTGAAAGTCACGGAAACCAGTGCCGATT
TAGCCTTAATTTTGGCGTTAATTTCCAGCTTCCGTAACCGTCCATTGCCGCAAGATTTGGTGATTTTTGGGGAAGTCGGC
TTAGCAGGGGAAATCCGCCCGGTTACCAGTGGGCAAGAGCGGATCAGCGAAGCCGCAAAACACGGCTTTAAACGGGCGAT
AATTCCTCACGGCAATGTCCCGAAAAAGGCAATTAAAGATATGCAGGTGTTCACCGTGAAAAAACTCAGTGATGCGTTAG
ATATTCTGTATAATCTCTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(347-432)

AAA domain (AAA_25)

(84-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.465

99.346

0.481
  radA Streptococcus mitis NCTC 12261

44.273

98.911

0.438
  radA Streptococcus mitis SK321

44.053

98.911

0.436
  radA Streptococcus pneumoniae TIGR4

43.573

100

0.436
  radA Streptococcus pneumoniae D39

43.573

100

0.436
  radA Streptococcus pneumoniae Rx1

43.573

100

0.436
  radA Streptococcus pneumoniae R6

43.573

100

0.436

Multiple sequence alignment