Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ABJR17_RS05345 | Genome accession | NZ_CP169357 |
| Coordinates | 1125512..1125991 (-) | Length | 159 a.a. |
| NCBI ID | WP_006248401.1 | Uniprot ID | A0A249A0S4 |
| Organism | Mannheimia haemolytica strain Mh184.20180323.PV.F | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1120512..1130991
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABJR17_RS05320 (ABJR17_001065) | yacG | 1121414..1121599 (-) | 186 | WP_006248406.1 | DNA gyrase inhibitor YacG | - |
| ABJR17_RS05325 (ABJR17_001066) | coaE | 1121581..1122216 (-) | 636 | WP_020831305.1 | dephospho-CoA kinase | - |
| ABJR17_RS05330 (ABJR17_001067) | - | 1122252..1122908 (-) | 657 | WP_006248404.1 | prepilin peptidase | - |
| ABJR17_RS05335 (ABJR17_001068) | pilC | 1122911..1124107 (-) | 1197 | WP_006248403.1 | type II secretion system F family protein | Machinery gene |
| ABJR17_RS05340 (ABJR17_001069) | pilB | 1124091..1125491 (-) | 1401 | WP_040080755.1 | GspE/PulE family protein | Machinery gene |
| ABJR17_RS05345 (ABJR17_001070) | pilA | 1125512..1125991 (-) | 480 | WP_006248401.1 | prepilin peptidase-dependent pilin | Machinery gene |
| ABJR17_RS05350 (ABJR17_001071) | radA | 1126172..1127551 (+) | 1380 | WP_040080753.1 | DNA repair protein RadA | Machinery gene |
| ABJR17_RS05355 (ABJR17_001072) | - | 1127606..1127836 (-) | 231 | WP_006248398.1 | YgjV family protein | - |
| ABJR17_RS05360 (ABJR17_001073) | folA | 1127956..1128449 (-) | 494 | Protein_1030 | type 3 dihydrofolate reductase | - |
| ABJR17_RS05365 (ABJR17_001074) | proB | 1128561..1129652 (+) | 1092 | WP_006251346.1 | glutamate 5-kinase | - |
| ABJR17_RS05370 (ABJR17_001075) | - | 1129652..1130416 (+) | 765 | WP_006248395.1 | TSUP family transporter | - |
Sequence
Protein
Download Length: 159 a.a. Molecular weight: 16841.15 Da Isoelectric Point: 8.7964
>NTDB_id=1050882 ABJR17_RS05345 WP_006248401.1 1125512..1125991(-) (pilA) [Mannheimia haemolytica strain Mh184.20180323.PV.F]
MQKIVHFRPLGIRQLHRAFTLIELMIVIAIIAILATIAIPSYNSYTQKAALSELLQASASYKSDVEVCIYNSGGLDNCSG
GTNGIQANKTSSNTTKYLNSIAVTKGVITVTGKGSLNGYGYTLTPSFSNNTISWTASCSGNDTSLFPANFCSTTVTPNG
MQKIVHFRPLGIRQLHRAFTLIELMIVIAIIAILATIAIPSYNSYTQKAALSELLQASASYKSDVEVCIYNSGGLDNCSG
GTNGIQANKTSSNTTKYLNSIAVTKGVITVTGKGSLNGYGYTLTPSFSNNTISWTASCSGNDTSLFPANFCSTTVTPNG
Nucleotide
Download Length: 480 bp
>NTDB_id=1050882 ABJR17_RS05345 WP_006248401.1 1125512..1125991(-) (pilA) [Mannheimia haemolytica strain Mh184.20180323.PV.F]
ATGCAAAAAATTGTACATTTTAGACCGCTTGGCATTCGCCAACTGCATCGGGCATTTACCCTCATTGAGTTGATGATCGT
GATTGCGATTATTGCCATTCTTGCCACTATTGCGATCCCTTCCTATAACTCATACACCCAAAAGGCGGCGTTATCGGAGT
TATTACAAGCATCTGCTTCGTATAAATCAGACGTTGAAGTCTGTATTTACAACAGTGGCGGGTTGGATAACTGCTCCGGT
GGCACGAATGGGATTCAGGCGAATAAAACCAGTAGTAATACCACTAAATACCTAAACTCAATTGCGGTAACAAAAGGCGT
GATTACGGTAACCGGCAAAGGCTCTCTGAATGGTTATGGCTATACCTTAACACCGTCGTTCTCAAATAATACGATTAGTT
GGACGGCAAGTTGTAGTGGCAATGATACGAGCCTATTTCCAGCTAATTTCTGTAGCACAACTGTTACACCAAACGGCTAA
ATGCAAAAAATTGTACATTTTAGACCGCTTGGCATTCGCCAACTGCATCGGGCATTTACCCTCATTGAGTTGATGATCGT
GATTGCGATTATTGCCATTCTTGCCACTATTGCGATCCCTTCCTATAACTCATACACCCAAAAGGCGGCGTTATCGGAGT
TATTACAAGCATCTGCTTCGTATAAATCAGACGTTGAAGTCTGTATTTACAACAGTGGCGGGTTGGATAACTGCTCCGGT
GGCACGAATGGGATTCAGGCGAATAAAACCAGTAGTAATACCACTAAATACCTAAACTCAATTGCGGTAACAAAAGGCGT
GATTACGGTAACCGGCAAAGGCTCTCTGAATGGTTATGGCTATACCTTAACACCGTCGTTCTCAAATAATACGATTAGTT
GGACGGCAAGTTGTAGTGGCAATGATACGAGCCTATTTCCAGCTAATTTCTGTAGCACAACTGTTACACCAAACGGCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Glaesserella parasuis strain SC1401 |
66.038 |
100 |
0.66 |
| pilA | Haemophilus influenzae 86-028NP |
56.429 |
88.05 |
0.497 |
| pilA | Haemophilus influenzae Rd KW20 |
54.93 |
89.308 |
0.491 |