Detailed information
Bioinformatically predicted
Overview
| Name | comEA/comE1 | Type | Machinery gene |
| Locus tag | ABJR16_RS07405 | Genome accession | NZ_CP169355 |
| Coordinates | 1532516..1532854 (-) | Length | 112 a.a. |
| NCBI ID | WP_006251644.1 | Uniprot ID | A0A248ZWT2 |
| Organism | Mannheimia haemolytica strain Mh184.20180323.PV.A | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1527516..1537854
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABJR16_RS07390 (ABJR16_001479) | - | 1527518..1528987 (-) | 1470 | WP_040080587.1 | class I SAM-dependent DNA methyltransferase | - |
| ABJR16_RS07395 (ABJR16_001480) | hsdR | 1529035..1531386 (-) | 2352 | WP_006250003.1 | EcoAI/FtnUII family type I restriction enzme subunit R | - |
| ABJR16_RS07400 (ABJR16_001481) | asd | 1531458..1532351 (-) | 894 | WP_006251643.1 | archaetidylserine decarboxylase | - |
| ABJR16_RS07405 (ABJR16_001482) | comEA/comE1 | 1532516..1532854 (-) | 339 | WP_006251644.1 | ComEA family DNA-binding protein | Machinery gene |
| ABJR16_RS07410 (ABJR16_001483) | - | 1533147..1534418 (+) | 1272 | WP_040080586.1 | LysM-like peptidoglycan-binding domain-containing protein | - |
| ABJR16_RS07415 (ABJR16_001484) | - | 1534478..1534894 (+) | 417 | WP_020824267.1 | MliC family protein | - |
| ABJR16_RS07420 (ABJR16_001485) | waaF | 1535004..1536041 (+) | 1038 | WP_020824266.1 | lipopolysaccharide heptosyltransferase II | - |
| ABJR16_RS07425 (ABJR16_001486) | rfaC | 1536109..1537068 (+) | 960 | WP_006250332.1 | lipopolysaccharide heptosyltransferase RfaC | - |
| ABJR16_RS07430 (ABJR16_001487) | rpsL | 1537189..1537563 (+) | 375 | WP_005543325.1 | 30S ribosomal protein S12 | - |
Sequence
Protein
Download Length: 112 a.a. Molecular weight: 12111.91 Da Isoelectric Point: 10.0993
>NTDB_id=1050842 ABJR16_RS07405 WP_006251644.1 1532516..1532854(-) (comEA/comE1) [Mannheimia haemolytica strain Mh184.20180323.PV.A]
MKKIKQLGLTFLFGLNAMAFAQTPPTTMPVEQNAVTQPVQQTQITNANAVNINTASAAELQDKLVGIGQKKAQAIVDYRT
KNGNFKNIEQLAEVSGIGQATVEKNRANIILE
MKKIKQLGLTFLFGLNAMAFAQTPPTTMPVEQNAVTQPVQQTQITNANAVNINTASAAELQDKLVGIGQKKAQAIVDYRT
KNGNFKNIEQLAEVSGIGQATVEKNRANIILE
Nucleotide
Download Length: 339 bp
>NTDB_id=1050842 ABJR16_RS07405 WP_006251644.1 1532516..1532854(-) (comEA/comE1) [Mannheimia haemolytica strain Mh184.20180323.PV.A]
ATGAAGAAAATCAAACAACTTGGTCTAACATTCTTGTTTGGCTTAAATGCAATGGCTTTTGCCCAAACACCGCCAACTAC
AATGCCTGTTGAACAAAATGCAGTCACTCAACCCGTACAGCAAACACAAATCACCAACGCCAATGCGGTAAATATCAATA
CTGCTAGTGCTGCTGAATTGCAAGACAAGCTAGTGGGAATTGGGCAGAAAAAAGCTCAAGCGATTGTCGATTACCGTACT
AAAAACGGCAATTTTAAAAACATTGAGCAACTTGCTGAAGTCTCCGGAATTGGGCAAGCAACGGTAGAAAAAAATCGAGC
CAATATTATTTTAGAATAA
ATGAAGAAAATCAAACAACTTGGTCTAACATTCTTGTTTGGCTTAAATGCAATGGCTTTTGCCCAAACACCGCCAACTAC
AATGCCTGTTGAACAAAATGCAGTCACTCAACCCGTACAGCAAACACAAATCACCAACGCCAATGCGGTAAATATCAATA
CTGCTAGTGCTGCTGAATTGCAAGACAAGCTAGTGGGAATTGGGCAGAAAAAAGCTCAAGCGATTGTCGATTACCGTACT
AAAAACGGCAATTTTAAAAACATTGAGCAACTTGCTGAAGTCTCCGGAATTGGGCAAGCAACGGTAGAAAAAAATCGAGC
CAATATTATTTTAGAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
59.292 |
100 |
0.598 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
52.747 |
81.25 |
0.429 |
| comEA | Vibrio cholerae C6706 |
54.651 |
76.786 |
0.42 |
| comEA | Vibrio cholerae strain A1552 |
54.651 |
76.786 |
0.42 |