Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACEY3T_RS22655 Genome accession   NZ_CP169352
Coordinates   4592192..4592722 (-) Length   176 a.a.
NCBI ID   WP_000168322.1    Uniprot ID   -
Organism   Salmonella enterica strain SA40     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4587192..4597722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEY3T_RS22635 (ACEY3T_22635) - 4587799..4588740 (-) 942 Protein_4434 hypothetical protein -
  ACEY3T_RS22645 (ACEY3T_22645) - 4590053..4590523 (-) 471 Protein_4436 hypothetical protein -
  ACEY3T_RS22650 (ACEY3T_22650) siiA 4590520..4591152 (-) 633 WP_000389245.1 SPI-4 type I secretion system auxiliary protein SiiA -
  ACEY3T_RS22655 (ACEY3T_22655) ssb 4592192..4592722 (-) 531 WP_000168322.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ACEY3T_RS22660 (ACEY3T_22660) uvrA 4592970..4595795 (+) 2826 WP_000357725.1 excinuclease ABC subunit UvrA -
  ACEY3T_RS22665 (ACEY3T_22665) - 4595927..4596382 (+) 456 WP_001609612.1 hypothetical protein -
  ACEY3T_RS22670 (ACEY3T_22670) - 4596369..4596707 (+) 339 WP_023138079.1 hypothetical protein -
  ACEY3T_RS22675 (ACEY3T_22675) - 4596708..4597064 (-) 357 WP_000155665.1 MmcQ/YjbR family DNA-binding protein -
  ACEY3T_RS22680 (ACEY3T_22680) - 4597067..4597483 (-) 417 WP_000270392.1 secondary thiamine-phosphate synthase enzyme YjbQ -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19074.15 Da        Isoelectric Point: 5.2456

>NTDB_id=1050805 ACEY3T_RS22655 WP_000168322.1 4592192..4592722(-) (ssb) [Salmonella enterica strain SA40]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDKQTGEMKEQTEWHRVVMFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQERYTTEINVPQIGGVMQMLGGRQGGGAPAGGQQQGGWGQPQQPQQPQGGNQFSGGAQSRPQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=1050805 ACEY3T_RS22655 WP_000168322.1 4592192..4592722(-) (ssb) [Salmonella enterica strain SA40]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTTGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
CGGCGCTGTCGCCAACTTAACGCTGGCTACTTCTGAATCCTGGCGCGATAAGCAGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGGGTGGTGATGTTCGGCAAACTGGCGGAAGTGGCCGGCGAATATCTGCGTAAAGGTTCTCAGGTGTATATC
GAAGGTCAATTGCGTACCCGCAAGTGGACCGATCAGAGTGGCCAGGAACGCTATACGACTGAAATTAACGTTCCGCAGAT
CGGCGGCGTGATGCAGATGCTGGGTGGTCGCCAGGGCGGCGGCGCGCCGGCAGGCGGTCAGCAGCAGGGGGGTTGGGGTC
AGCCGCAACAACCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCGCGTCCACAGCAATCCGCGCCA
GCGCCGTCTAACGAACCGCCAATGGATTTTGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.978

100

0.744
  ssb Glaesserella parasuis strain SC1401

60.109

100

0.625
  ssb Neisseria gonorrhoeae MS11

46.448

100

0.483
  ssb Neisseria meningitidis MC58

46.409

100

0.477

Multiple sequence alignment