Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACETK7_RS14765 Genome accession   NZ_CP169287
Coordinates   3180378..3181442 (-) Length   354 a.a.
NCBI ID   WP_214380301.1    Uniprot ID   -
Organism   Pseudomonas hormoni strain G20-18_CNT1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3175378..3186442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACETK7_RS14740 (ACETK7_14740) aroK 3176047..3176565 (-) 519 WP_017336125.1 shikimate kinase AroK -
  ACETK7_RS14745 (ACETK7_14745) pilQ 3176570..3178657 (-) 2088 WP_214380305.1 type IV pilus secretin PilQ Machinery gene
  ACETK7_RS14750 (ACETK7_14750) - 3178671..3179198 (-) 528 WP_214380304.1 pilus assembly protein PilP -
  ACETK7_RS14755 (ACETK7_14755) pilO 3179195..3179818 (-) 624 WP_214380303.1 type 4a pilus biogenesis protein PilO -
  ACETK7_RS14760 (ACETK7_14760) - 3179815..3180378 (-) 564 WP_214380302.1 PilN domain-containing protein -
  ACETK7_RS14765 (ACETK7_14765) comM 3180378..3181442 (-) 1065 WP_214380301.1 pilus assembly protein PilM Machinery gene
  ACETK7_RS14770 (ACETK7_14770) - 3181662..3184097 (+) 2436 WP_375379884.1 penicillin-binding protein 1A -
  ACETK7_RS14775 (ACETK7_14775) - 3184337..3185605 (-) 1269 WP_214380299.1 malic enzyme-like NAD(P)-binding protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38185.68 Da        Isoelectric Point: 4.7290

>NTDB_id=1050213 ACETK7_RS14765 WP_214380301.1 3180378..3181442(-) (comM) [Pseudomonas hormoni strain G20-18_CNT1]
MLGLFNKKANTLLGIDISSTSVKLLELSRQGDRYRVEAYAVEPLPASAVVEKNIAELEGVGQALTRVLLKARTSLRNVAV
AVAGSAVITKTIEMDAGLSDDEMENQLKIEADQYIPYPLDEVAIDFEVQGPSARNPERVNVLLAACRKENVEVREAALAL
AGLTARVVDVEAYALERSFGLLTGQLATAQERLTIAVVDIGATMTTLSVLYNGRIIYTREQLFGGRQLTEEIQRRYGLTL
EQAGLAKKQGGLPDDYVSEVLQPFRDALVQQVSRSLQFFFASGQYNAVDHILLAGGTASVPGLDRLIEQRLGTPTQVANP
FSNMTLSSKVNAGALASDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=1050213 ACETK7_RS14765 WP_214380301.1 3180378..3181442(-) (comM) [Pseudomonas hormoni strain G20-18_CNT1]
GTGCTAGGACTCTTCAATAAAAAGGCCAATACGCTTCTGGGGATCGACATCAGCTCCACGTCGGTGAAGCTTCTGGAGCT
AAGCCGCCAGGGCGACCGCTACCGGGTCGAGGCCTATGCGGTAGAGCCGCTGCCCGCCAGCGCGGTGGTCGAGAAAAATA
TCGCCGAGCTCGAAGGCGTGGGTCAGGCACTCACGCGCGTGCTACTCAAGGCCAGAACCAGTCTCAGGAACGTCGCGGTG
GCCGTTGCCGGCTCGGCGGTGATCACCAAGACCATCGAAATGGATGCCGGTCTTTCCGACGACGAGATGGAAAACCAGCT
CAAAATCGAGGCTGATCAATACATCCCTTATCCGCTGGACGAAGTGGCCATCGACTTCGAAGTCCAGGGGCCATCGGCGC
GCAACCCCGAGCGGGTCAATGTGTTGCTGGCAGCCTGTCGCAAGGAAAACGTCGAAGTCCGTGAGGCGGCGCTCGCGCTG
GCCGGCCTGACCGCTCGCGTAGTCGATGTCGAGGCATACGCGCTGGAGCGATCTTTCGGTTTGCTGACTGGACAGCTGGC
AACCGCTCAGGAGCGCCTGACGATCGCCGTGGTCGACATCGGTGCGACCATGACCACGCTCAGCGTCCTGTACAACGGAC
GCATTATCTACACCCGCGAACAATTGTTCGGCGGTCGTCAACTGACGGAAGAAATCCAGCGACGTTATGGCCTGACCCTC
GAACAAGCGGGGTTGGCAAAGAAGCAGGGCGGTTTGCCGGACGACTACGTCAGCGAGGTGCTGCAGCCGTTTCGTGATGC
GCTGGTGCAGCAGGTGTCGCGGTCATTGCAGTTTTTCTTCGCCTCCGGGCAGTACAACGCGGTCGATCACATCCTGTTGG
CTGGCGGCACCGCTTCGGTCCCGGGGCTGGACCGGTTGATCGAGCAACGTTTGGGCACGCCGACGCAGGTGGCAAATCCC
TTCTCGAACATGACCCTGAGCAGCAAGGTCAACGCCGGCGCCCTGGCCAGCGATGCGCCGGCGCTGATGATCGCTTGCGG
GCTGGCCCTCAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

57.345

100

0.573
  pilM Acinetobacter baumannii D1279779

57.062

100

0.571
  comM Acinetobacter baylyi ADP1

54.237

100

0.542
  pilM Legionella pneumophila strain ERS1305867

48.023

100

0.48

Multiple sequence alignment