Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | AKG93_RS15350 | Genome accession | NZ_CP169261 |
| Coordinates | 3336254..3336847 (-) | Length | 197 a.a. |
| NCBI ID | WP_005451500.1 | Uniprot ID | A0A9X3S2A2 |
| Organism | Vibrio harveyi strain VH2 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3331254..3341847
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AKG93_RS15330 (AKG93_015330) | aroB | 3332123..3333223 (-) | 1101 | WP_038898114.1 | 3-dehydroquinate synthase | - |
| AKG93_RS15335 (AKG93_015335) | aroK | 3333255..3333773 (-) | 519 | WP_005451507.1 | shikimate kinase AroK | - |
| AKG93_RS15340 (AKG93_015340) | pilQ | 3333963..3335714 (-) | 1752 | WP_005451505.1 | type IV pilus secretin PilQ | Machinery gene |
| AKG93_RS15345 (AKG93_015345) | pilP | 3335749..3336264 (-) | 516 | WP_045485666.1 | pilus assembly protein PilP | Machinery gene |
| AKG93_RS15350 (AKG93_015350) | pilO | 3336254..3336847 (-) | 594 | WP_005451500.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| AKG93_RS15355 (AKG93_015355) | pilN | 3336840..3337415 (-) | 576 | WP_005451499.1 | PilN domain-containing protein | Machinery gene |
| AKG93_RS15360 (AKG93_015360) | pilM | 3337399..3338415 (-) | 1017 | WP_029789968.1 | type IV pilus assembly protein PilM | Machinery gene |
| AKG93_RS15365 (AKG93_015365) | - | 3338594..3341164 (+) | 2571 | WP_053052380.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 23020.58 Da Isoelectric Point: 4.8068
>NTDB_id=1050052 AKG93_RS15350 WP_005451500.1 3336254..3336847(-) (pilO) [Vibrio harveyi strain VH2]
MVNWQDLEMDEIAEWPLVPQIVVILLLVVLIQGLGYWFYLKPEQEQLNNLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGDKQSEHFLYRLPLDIELTGDFHDIGRFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVKANTYQFKPEVKKDEK
MVNWQDLEMDEIAEWPLVPQIVVILLLVVLIQGLGYWFYLKPEQEQLNNLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGDKQSEHFLYRLPLDIELTGDFHDIGRFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVKANTYQFKPEVKKDEK
Nucleotide
Download Length: 594 bp
>NTDB_id=1050052 AKG93_RS15350 WP_005451500.1 3336254..3336847(-) (pilO) [Vibrio harveyi strain VH2]
ATGGTTAATTGGCAAGATCTAGAAATGGATGAGATCGCTGAGTGGCCATTGGTGCCTCAGATAGTAGTGATCTTGTTGTT
AGTTGTGCTGATTCAAGGCCTTGGTTATTGGTTTTATTTAAAGCCAGAGCAAGAGCAGCTGAATAACCTTATTCAAGAAG
AACAAACCTTAAAAGTTGCGTTACGGATCAAAGCGAACAAAGTCGCTGCTTTGCCTCAATTGCAATCGCAACTTGATGAG
CTTACTACTCGATACGAATTGCTACTGCAACAACTGCCTGCACAGAAAGAGCTGGCAACCATGTTGGCTTCGGTGAATGA
ACTCGGAATTGATAATAAGTTGACGTTCACCCGAATCGACTGGGGTGATAAGCAATCAGAACACTTCCTTTATCGTTTAC
CGCTCGACATTGAGTTGACAGGGGATTTTCATGATATCGGTCGTTTCTCCCAAGCGATTGCGACGTTGCCACGCATCATC
ACTTTTAAAGACGTGACTTGGCAGCGTGTCAGCCAAGAGAGTGAAACTCTGCACTTTCGTGTGAAAGCAAACACTTACCA
GTTCAAACCAGAGGTGAAGAAAGATGAGAAGTAA
ATGGTTAATTGGCAAGATCTAGAAATGGATGAGATCGCTGAGTGGCCATTGGTGCCTCAGATAGTAGTGATCTTGTTGTT
AGTTGTGCTGATTCAAGGCCTTGGTTATTGGTTTTATTTAAAGCCAGAGCAAGAGCAGCTGAATAACCTTATTCAAGAAG
AACAAACCTTAAAAGTTGCGTTACGGATCAAAGCGAACAAAGTCGCTGCTTTGCCTCAATTGCAATCGCAACTTGATGAG
CTTACTACTCGATACGAATTGCTACTGCAACAACTGCCTGCACAGAAAGAGCTGGCAACCATGTTGGCTTCGGTGAATGA
ACTCGGAATTGATAATAAGTTGACGTTCACCCGAATCGACTGGGGTGATAAGCAATCAGAACACTTCCTTTATCGTTTAC
CGCTCGACATTGAGTTGACAGGGGATTTTCATGATATCGGTCGTTTCTCCCAAGCGATTGCGACGTTGCCACGCATCATC
ACTTTTAAAGACGTGACTTGGCAGCGTGTCAGCCAAGAGAGTGAAACTCTGCACTTTCGTGTGAAAGCAAACACTTACCA
GTTCAAACCAGAGGTGAAGAAAGATGAGAAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio campbellii strain DS40M4 |
93.158 |
96.447 |
0.898 |
| pilO | Vibrio cholerae strain A1552 |
71.066 |
100 |
0.711 |