Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   AKG93_RS15345 Genome accession   NZ_CP169261
Coordinates   3335749..3336264 (-) Length   171 a.a.
NCBI ID   WP_045485666.1    Uniprot ID   -
Organism   Vibrio harveyi strain VH2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3330749..3341264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AKG93_RS15330 (AKG93_015330) aroB 3332123..3333223 (-) 1101 WP_038898114.1 3-dehydroquinate synthase -
  AKG93_RS15335 (AKG93_015335) aroK 3333255..3333773 (-) 519 WP_005451507.1 shikimate kinase AroK -
  AKG93_RS15340 (AKG93_015340) pilQ 3333963..3335714 (-) 1752 WP_005451505.1 type IV pilus secretin PilQ Machinery gene
  AKG93_RS15345 (AKG93_015345) pilP 3335749..3336264 (-) 516 WP_045485666.1 pilus assembly protein PilP Machinery gene
  AKG93_RS15350 (AKG93_015350) pilO 3336254..3336847 (-) 594 WP_005451500.1 type 4a pilus biogenesis protein PilO Machinery gene
  AKG93_RS15355 (AKG93_015355) pilN 3336840..3337415 (-) 576 WP_005451499.1 PilN domain-containing protein Machinery gene
  AKG93_RS15360 (AKG93_015360) pilM 3337399..3338415 (-) 1017 WP_029789968.1 type IV pilus assembly protein PilM Machinery gene
  AKG93_RS15365 (AKG93_015365) - 3338594..3341164 (+) 2571 WP_053052380.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19172.30 Da        Isoelectric Point: 10.1513

>NTDB_id=1050051 AKG93_RS15345 WP_045485666.1 3335749..3336264(-) (pilP) [Vibrio harveyi strain VH2]
MRSKSLLMVCIASVLTACQANDESLTEFIRDVENQARRDVTKLQPVEEYVVVNYEPEILRAPFELPKEATIATQPVARKD
CWQPPSRKRTGKLERFPLAQLRLKGVMGIGSSVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVSHNYLLINETLPDGLGC
WQKRKVKLALR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1050051 AKG93_RS15345 WP_045485666.1 3335749..3336264(-) (pilP) [Vibrio harveyi strain VH2]
ATGAGAAGTAAATCTTTGCTGATGGTGTGTATTGCTAGCGTTTTGACTGCCTGCCAAGCCAATGATGAATCACTGACGGA
ATTTATTCGTGACGTGGAGAACCAAGCTCGCCGTGATGTCACCAAACTGCAGCCTGTTGAAGAGTATGTTGTCGTTAATT
ACGAACCCGAAATATTGCGTGCACCTTTCGAATTGCCAAAAGAGGCAACGATTGCGACTCAACCTGTTGCAAGAAAAGAC
TGCTGGCAACCTCCTTCAAGAAAGCGAACTGGCAAATTGGAAAGGTTTCCTCTTGCGCAACTGCGCTTGAAGGGGGTGAT
GGGTATCGGCAGCAGTGTTTCTGGGTTGGTTCAGGCTCCGAATGGCACTGTTTACAAAGTAAAACCAGGTCAATACCTCG
GACGCAACAATGGCAAGGTTACCCATGTATCCCACAACTATTTATTGATTAATGAAACCTTGCCAGACGGTTTGGGCTGT
TGGCAAAAACGCAAAGTTAAGTTGGCTTTGAGATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

90.643

100

0.906
  pilP Vibrio cholerae strain A1552

56.977

100

0.573

Multiple sequence alignment