Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | ACEPPP_RS18685 | Genome accession | NZ_CP169217 |
| Coordinates | 4163230..4164399 (+) | Length | 389 a.a. |
| NCBI ID | WP_374088867.1 | Uniprot ID | - |
| Organism | Methylomicrobium lacus strain 22M6SE5-12 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4158230..4169399
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACEPPP_RS18655 (ACEPPP_18655) | zapD | 4158630..4159400 (+) | 771 | WP_374088861.1 | cell division protein ZapD | - |
| ACEPPP_RS18660 (ACEPPP_18660) | yacG | 4159400..4159591 (+) | 192 | WP_374088862.1 | DNA gyrase inhibitor YacG | - |
| ACEPPP_RS18665 (ACEPPP_18665) | - | 4159603..4160556 (-) | 954 | WP_374088863.1 | Nudix family hydrolase | - |
| ACEPPP_RS18670 (ACEPPP_18670) | argJ | 4160575..4161789 (-) | 1215 | WP_374088864.1 | bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ | - |
| ACEPPP_RS18675 (ACEPPP_18675) | - | 4161837..4162073 (-) | 237 | WP_374088865.1 | sulfurtransferase TusA family protein | - |
| ACEPPP_RS18680 (ACEPPP_18680) | - | 4162070..4163110 (-) | 1041 | WP_374088866.1 | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase | - |
| ACEPPP_RS18685 (ACEPPP_18685) | pilU | 4163230..4164399 (+) | 1170 | WP_374088867.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| ACEPPP_RS18690 (ACEPPP_18690) | putA | 4164396..4167476 (-) | 3081 | WP_374088868.1 | bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA | - |
| ACEPPP_RS18695 (ACEPPP_18695) | - | 4167590..4167925 (+) | 336 | WP_374088869.1 | ASCH domain-containing protein | - |
| ACEPPP_RS18700 (ACEPPP_18700) | - | 4167957..4168955 (-) | 999 | WP_374088870.1 | GGDEF domain-containing protein | - |
Sequence
Protein
Download Length: 389 a.a. Molecular weight: 43000.05 Da Isoelectric Point: 6.0209
>NTDB_id=1049866 ACEPPP_RS18685 WP_374088867.1 4163230..4164399(+) (pilU) [Methylomicrobium lacus strain 22M6SE5-12]
MEFKDYLKILVQHDGSDLYLTVDAPPAAKFQGNLKPLENSKLTRERIKEIAYGLMDADQQKAFEQVPELNMALSEPGIGR
FRVNIFKQRNSFALVIRNIKVDIPNADKLGLPDVLKKTIMEKRGLILFVGGTGSGKSTSLAALIDHRNTNASGHIITIED
PIEYIHPHKKSLVNQREVGVDTLSYEDALKNTLRQAPDVILIGEIRSQETMEHALAFAETGHLCLSTLHANNANQALDRI
INFFPEERRNQLLLDLSLNLKAFVSQRLVPTVDGKRTAAIEILLGTQLVRDLIQKGDVHSIKEAMEKSENIGMQTFDSHL
LRLYKAGTISLDEALQNSDSPNNLKLKINLSEGVGSATAKMADSKDSQGSGLGSLSLQAIQTEAEEEET
MEFKDYLKILVQHDGSDLYLTVDAPPAAKFQGNLKPLENSKLTRERIKEIAYGLMDADQQKAFEQVPELNMALSEPGIGR
FRVNIFKQRNSFALVIRNIKVDIPNADKLGLPDVLKKTIMEKRGLILFVGGTGSGKSTSLAALIDHRNTNASGHIITIED
PIEYIHPHKKSLVNQREVGVDTLSYEDALKNTLRQAPDVILIGEIRSQETMEHALAFAETGHLCLSTLHANNANQALDRI
INFFPEERRNQLLLDLSLNLKAFVSQRLVPTVDGKRTAAIEILLGTQLVRDLIQKGDVHSIKEAMEKSENIGMQTFDSHL
LRLYKAGTISLDEALQNSDSPNNLKLKINLSEGVGSATAKMADSKDSQGSGLGSLSLQAIQTEAEEEET
Nucleotide
Download Length: 1170 bp
>NTDB_id=1049866 ACEPPP_RS18685 WP_374088867.1 4163230..4164399(+) (pilU) [Methylomicrobium lacus strain 22M6SE5-12]
ATGGAATTCAAAGATTATTTAAAAATCCTGGTGCAACACGACGGCTCCGATCTCTATCTGACGGTCGATGCGCCGCCCGC
GGCAAAGTTTCAAGGCAACCTGAAGCCCTTGGAAAACAGTAAGCTGACCAGGGAGCGCATCAAGGAGATTGCCTATGGCC
TGATGGACGCAGATCAGCAAAAGGCCTTCGAACAGGTGCCCGAACTGAATATGGCGCTTTCGGAGCCCGGCATCGGCCGC
TTCCGGGTCAATATCTTCAAGCAGCGCAACAGCTTCGCGCTGGTGATCCGCAATATCAAGGTGGATATTCCGAATGCGGA
CAAACTCGGCCTGCCGGACGTCTTGAAAAAAACGATCATGGAAAAACGCGGTCTGATCCTGTTCGTCGGCGGCACCGGCT
CCGGTAAATCGACCTCGCTGGCCGCCTTGATCGACCATCGCAATACGAATGCGTCGGGCCATATCATCACGATCGAAGAC
CCGATCGAATATATCCATCCGCACAAAAAATCGCTGGTCAACCAGCGCGAAGTCGGCGTCGATACGCTGAGCTATGAGGA
TGCCTTGAAGAATACCCTGCGGCAGGCGCCGGACGTGATCCTGATCGGCGAAATCCGCAGTCAGGAAACGATGGAGCATG
CCCTGGCTTTCGCCGAAACCGGCCATCTCTGTTTGTCCACCTTGCACGCGAACAATGCGAACCAGGCGCTCGACCGGATC
ATCAACTTCTTCCCGGAAGAACGCCGGAATCAATTGTTGCTCGATCTGTCGCTGAACCTGAAGGCCTTCGTCTCGCAGCG
CCTGGTGCCGACGGTCGACGGCAAACGCACCGCCGCGATCGAAATTTTGCTGGGCACGCAGCTGGTCCGCGATCTGATTC
AAAAAGGCGACGTACACAGCATCAAGGAAGCGATGGAAAAATCCGAGAATATCGGCATGCAGACCTTCGACAGCCATTTG
TTGCGGCTTTATAAGGCGGGCACGATTTCGCTCGATGAGGCGCTGCAAAACTCCGATTCGCCGAACAACCTGAAGCTGAA
GATCAATTTGAGCGAAGGTGTCGGGTCTGCGACGGCCAAAATGGCCGATTCCAAGGATTCGCAAGGCAGCGGACTCGGTT
CCTTGTCATTGCAGGCGATCCAAACAGAAGCAGAGGAAGAAGAAACCTAA
ATGGAATTCAAAGATTATTTAAAAATCCTGGTGCAACACGACGGCTCCGATCTCTATCTGACGGTCGATGCGCCGCCCGC
GGCAAAGTTTCAAGGCAACCTGAAGCCCTTGGAAAACAGTAAGCTGACCAGGGAGCGCATCAAGGAGATTGCCTATGGCC
TGATGGACGCAGATCAGCAAAAGGCCTTCGAACAGGTGCCCGAACTGAATATGGCGCTTTCGGAGCCCGGCATCGGCCGC
TTCCGGGTCAATATCTTCAAGCAGCGCAACAGCTTCGCGCTGGTGATCCGCAATATCAAGGTGGATATTCCGAATGCGGA
CAAACTCGGCCTGCCGGACGTCTTGAAAAAAACGATCATGGAAAAACGCGGTCTGATCCTGTTCGTCGGCGGCACCGGCT
CCGGTAAATCGACCTCGCTGGCCGCCTTGATCGACCATCGCAATACGAATGCGTCGGGCCATATCATCACGATCGAAGAC
CCGATCGAATATATCCATCCGCACAAAAAATCGCTGGTCAACCAGCGCGAAGTCGGCGTCGATACGCTGAGCTATGAGGA
TGCCTTGAAGAATACCCTGCGGCAGGCGCCGGACGTGATCCTGATCGGCGAAATCCGCAGTCAGGAAACGATGGAGCATG
CCCTGGCTTTCGCCGAAACCGGCCATCTCTGTTTGTCCACCTTGCACGCGAACAATGCGAACCAGGCGCTCGACCGGATC
ATCAACTTCTTCCCGGAAGAACGCCGGAATCAATTGTTGCTCGATCTGTCGCTGAACCTGAAGGCCTTCGTCTCGCAGCG
CCTGGTGCCGACGGTCGACGGCAAACGCACCGCCGCGATCGAAATTTTGCTGGGCACGCAGCTGGTCCGCGATCTGATTC
AAAAAGGCGACGTACACAGCATCAAGGAAGCGATGGAAAAATCCGAGAATATCGGCATGCAGACCTTCGACAGCCATTTG
TTGCGGCTTTATAAGGCGGGCACGATTTCGCTCGATGAGGCGCTGCAAAACTCCGATTCGCCGAACAACCTGAAGCTGAA
GATCAATTTGAGCGAAGGTGTCGGGTCTGCGACGGCCAAAATGGCCGATTCCAAGGATTCGCAAGGCAGCGGACTCGGTT
CCTTGTCATTGCAGGCGATCCAAACAGAAGCAGAGGAAGAAGAAACCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
56.757 |
95.116 |
0.54 |
| pilU | Acinetobacter baylyi ADP1 |
52.825 |
91.003 |
0.481 |
| pilU | Vibrio cholerae strain A1552 |
47.409 |
99.229 |
0.47 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
41.111 |
92.545 |
0.38 |