Detailed information NTG1049865

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACEPPP_RS18645
• Genome accession: NZ_CP169217
• Coordinates: 4157117..4158007 (+)
• Length: 296 a.a.
• NCBI ID: WP_374088859.1
• Uniprot ID: -
• Organism: Methylomicrobium lacus strain 22M6SE5-12
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4152117..4163007

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACEPPP_RS18635 (ACEPPP_18635)	pilB	4154114..4155826 (+)	1713	WP_374088857.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACEPPP_RS18640 (ACEPPP_18640)	pilC	4155833..4157053 (+)	1221	WP_374088858.1	type II secretion system F family protein	Machinery gene
ACEPPP_RS18645 (ACEPPP_18645)	pilD	4157117..4158007 (+)	891	WP_374088859.1	A24 family peptidase	Machinery gene
ACEPPP_RS18650 (ACEPPP_18650)	coaE	4158020..4158652 (+)	633	WP_374088860.1	dephospho-CoA kinase	-
ACEPPP_RS18655 (ACEPPP_18655)	zapD	4158630..4159400 (+)	771	WP_374088861.1	cell division protein ZapD	-
ACEPPP_RS18660 (ACEPPP_18660)	yacG	4159400..4159591 (+)	192	WP_374088862.1	DNA gyrase inhibitor YacG	-
ACEPPP_RS18665 (ACEPPP_18665)	-	4159603..4160556 (-)	954	WP_374088863.1	Nudix family hydrolase	-
ACEPPP_RS18670 (ACEPPP_18670)	argJ	4160575..4161789 (-)	1215	WP_374088864.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
ACEPPP_RS18675 (ACEPPP_18675)	-	4161837..4162073 (-)	237	WP_374088865.1	sulfurtransferase TusA family protein	-

Sequence

Protein

• Length: 296 a.a.
• Molecular weight: 32647.65 Da
• Isoelectric Point: 7.0807

>NTDB_id=1049865 ACEPPP_RS18645 WP_374088859.1 4157117..4158007(+) (pilD) [Methylomicrobium lacus strain 22M6SE5-12]
MTELSDFLPYLVFIIGLMVGSFLNVVIYRLPIMMYRGWRRECIEFLELAPEAVPAPQSAGNVRLTEEEPFNLALPLSRCS
SCKTPIKPYQNIPLLSYLFLKGKCAHCGSKISWRYPAIELFTAVLSAVVALHFGYSLQTLFALLLTWSLVALSFIDIDHH
LLPDSINLPVLWGGLVLSLFGFYTDAHASIIGAAAGYGSLWIVYHLFKLVTGKEGMGFGDFKLLALFGAWLGWQSLPLII
LLSALTGAVFGIASILFAKRDHAAPIPFGPYLAVAGWIALIWGDAINRLYLDTVGF

Nucleotide

• Length: 891 bp

>NTDB_id=1049865 ACEPPP_RS18645 WP_374088859.1 4157117..4158007(+) (pilD) [Methylomicrobium lacus strain 22M6SE5-12]
ATGACAGAATTGAGCGATTTTTTACCTTATCTCGTTTTTATCATTGGCCTGATGGTCGGCAGTTTTCTCAATGTGGTGAT
CTACCGTCTGCCCATCATGATGTACCGGGGGTGGCGCAGGGAATGCATCGAATTTCTGGAGTTGGCGCCGGAGGCGGTGC
CGGCCCCGCAAAGCGCCGGCAATGTCCGGCTCACCGAGGAAGAGCCTTTTAACCTGGCCCTGCCTTTATCGCGTTGTTCG
TCCTGCAAGACGCCGATCAAGCCTTATCAGAATATTCCGCTGCTCAGCTATCTGTTTTTGAAAGGCAAATGCGCGCATTG
CGGCTCCAAAATCTCCTGGCGTTATCCTGCGATCGAGCTGTTTACCGCGGTGCTGTCCGCGGTGGTCGCCTTACATTTCG
GCTATAGCCTGCAAACCTTGTTCGCGCTCTTATTGACCTGGTCTCTGGTCGCGTTGAGCTTTATCGACATCGACCATCAT
CTGTTGCCCGATTCGATCAATCTGCCGGTGCTTTGGGGGGGGCTGGTACTGAGTTTGTTCGGGTTCTATACCGATGCGCA
TGCCAGCATTATCGGCGCGGCTGCCGGCTATGGCTCGCTCTGGATCGTCTATCATCTGTTCAAACTGGTTACCGGCAAGG
AAGGCATGGGTTTTGGCGACTTCAAATTGCTGGCGCTGTTCGGCGCCTGGCTCGGATGGCAGAGCCTGCCGTTGATCATT
CTGCTTTCCGCCCTGACCGGCGCGGTGTTCGGCATCGCTTCGATCCTATTCGCCAAACGCGACCATGCCGCGCCGATCCC
TTTCGGTCCCTATCTGGCCGTTGCCGGCTGGATTGCTCTGATCTGGGGGGATGCGATCAATCGTCTCTATCTCGACACCG
TCGGCTTTTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-133)

• Type IV leader peptidase family (Peptidase_A24) (144-252)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	49.832	100	0.5
pilD	Vibrio cholerae strain A1552	51.049	96.622	0.493
pilD	Acinetobacter nosocomialis M2	51.071	94.595	0.483
pilD	Acinetobacter baumannii D1279779	50.714	94.595	0.48
pilD	Neisseria gonorrhoeae MS11	47.44	98.986	0.47