Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACEPPP_RS02375 Genome accession   NZ_CP169217
Coordinates   530937..531428 (-) Length   163 a.a.
NCBI ID   WP_374089462.1    Uniprot ID   -
Organism   Methylomicrobium lacus strain 22M6SE5-12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 529918..530073 530937..531428 flank 864


Gene organization within MGE regions


Location: 529918..531428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPPP_RS02360 (ACEPPP_02360) - 529918..530121 (-) 204 Protein_464 transposase -
  ACEPPP_RS02365 (ACEPPP_02365) - 530122..530454 (+) 333 Protein_465 integrase core domain-containing protein -
  ACEPPP_RS02370 (ACEPPP_02370) - 530604..530918 (-) 315 WP_374089461.1 restriction endonuclease subunit S -
  ACEPPP_RS02375 (ACEPPP_02375) ssb 530937..531428 (-) 492 WP_374089462.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18238.15 Da        Isoelectric Point: 5.8118

>NTDB_id=1049847 ACEPPP_RS02375 WP_374089462.1 530937..531428(-) (ssb) [Methylomicrobium lacus strain 22M6SE5-12]
MLNKVMLIGRLGVDPEVRFLPSGGQVTTIRLATSRRWRDKQTNERKEETEWHRVVFFSRLAEIAGEYLKKGSQVYVEGRI
RTQKWQGQDGQDRYTTEIVAEEMHMLDSRSGGTASFGGDQAQSGYASSSRPSAPAQRSDAPTSSGSMPPSPSNYDDFDDD
IPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=1049847 ACEPPP_RS02375 WP_374089462.1 530937..531428(-) (ssb) [Methylomicrobium lacus strain 22M6SE5-12]
ATGCTGAATAAAGTTATGTTGATAGGAAGGTTGGGGGTCGATCCTGAAGTTCGCTTCCTGCCGAGCGGCGGTCAGGTCAC
GACGATTCGCCTGGCCACCAGCAGAAGATGGAGGGATAAACAGACGAATGAACGCAAGGAAGAGACCGAATGGCACCGCG
TGGTGTTTTTCAGCCGTCTCGCCGAAATTGCGGGCGAATATTTGAAAAAAGGCAGCCAGGTCTATGTCGAGGGACGCATC
CGGACCCAGAAGTGGCAAGGACAGGACGGCCAGGACCGTTACACGACCGAAATCGTCGCGGAAGAAATGCATATGTTAGA
CAGTCGCAGCGGCGGCACCGCCAGCTTTGGCGGCGATCAAGCGCAATCGGGTTATGCCTCTTCGAGCCGGCCGTCGGCTC
CAGCGCAACGGTCGGATGCGCCGACGTCTTCGGGCTCGATGCCGCCGTCTCCGTCTAATTATGATGATTTCGACGACGAT
ATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.128

100

0.552
  ssb Vibrio cholerae strain A1552

51.163

100

0.54
  ssb Neisseria gonorrhoeae MS11

47.399

100

0.503
  ssb Neisseria meningitidis MC58

45.665

100

0.485

Multiple sequence alignment