Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACETK8_RS07175 Genome accession   NZ_CP169082
Coordinates   1425808..1426311 (+) Length   167 a.a.
NCBI ID   WP_374038822.1    Uniprot ID   -
Organism   Brevundimonas staleyi strain CCUG 57884     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1420808..1431311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACETK8_RS07155 (ACETK8_07155) - 1421384..1421512 (-) 129 WP_374038818.1 hypothetical protein -
  ACETK8_RS07160 (ACETK8_07160) - 1421643..1424465 (+) 2823 WP_374038819.1 transcriptional regulator -
  ACETK8_RS07165 (ACETK8_07165) - 1424557..1425261 (+) 705 WP_374038820.1 hypothetical protein -
  ACETK8_RS07170 (ACETK8_07170) - 1425261..1425698 (+) 438 WP_374038821.1 hypothetical protein -
  ACETK8_RS07175 (ACETK8_07175) ssb 1425808..1426311 (+) 504 WP_374038822.1 single-stranded DNA-binding protein Machinery gene
  ACETK8_RS07180 (ACETK8_07180) - 1426334..1426753 (-) 420 WP_374038823.1 type II toxin-antitoxin system VapC family toxin -
  ACETK8_RS07185 (ACETK8_07185) - 1426716..1426976 (-) 261 WP_374038824.1 type II toxin-antitoxin system prevent-host-death family antitoxin -
  ACETK8_RS07190 (ACETK8_07190) - 1427074..1427982 (+) 909 WP_374038825.1 DMT family transporter -
  ACETK8_RS07195 (ACETK8_07195) - 1428411..1428412 (-) 2 WP_374038826.1 IS5 family transposase -
  ACETK8_RS07200 (ACETK8_07200) - 1428819..1429364 (-) 546 WP_374038827.1 TetR/AcrR family transcriptional regulator -
  ACETK8_RS07205 (ACETK8_07205) udk 1429540..1430193 (-) 654 WP_374038828.1 uridine kinase -
  ACETK8_RS07210 (ACETK8_07210) - 1430276..1430869 (-) 594 WP_374038829.1 hypothetical protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18018.89 Da        Isoelectric Point: 5.9650

>NTDB_id=1049822 ACETK8_RS07175 WP_374038822.1 1425808..1426311(+) (ssb) [Brevundimonas staleyi strain CCUG 57884]
MAGSVNKVILIGNLGRDPEIRSMPNGDRIANLSIATSEQWRDKASGERKEKTEWHRVVIFNDNIVKVVENYVKKGTTVYI
EGALQTRKWTDQQGVEKYSTEIVVGRFKGELTLLGGRGDGAGQGGGYGGGSGGRSNDDDYSSGFSTGGANKPSGPKESYD
LNDDIPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=1049822 ACETK8_RS07175 WP_374038822.1 1425808..1426311(+) (ssb) [Brevundimonas staleyi strain CCUG 57884]
ATGGCGGGAAGCGTCAACAAGGTCATCCTCATCGGCAATCTGGGCCGCGATCCCGAGATCCGCTCCATGCCGAACGGCGA
CCGTATCGCCAATCTGTCGATCGCCACCTCGGAACAATGGCGCGACAAGGCCTCGGGCGAGCGCAAGGAAAAGACCGAGT
GGCACCGCGTCGTCATCTTCAACGACAACATCGTCAAGGTCGTTGAGAACTATGTGAAAAAAGGCACGACCGTCTACATC
GAGGGCGCGCTCCAGACCCGCAAATGGACCGACCAGCAGGGCGTCGAGAAATACTCCACCGAGATCGTGGTCGGCCGCTT
CAAGGGCGAACTGACGTTGCTGGGCGGACGCGGCGACGGCGCGGGTCAGGGCGGCGGCTACGGCGGCGGTTCGGGCGGTC
GCTCGAACGACGACGACTACTCCTCCGGCTTCTCCACCGGCGGCGCCAACAAGCCCTCGGGTCCCAAGGAATCCTACGAC
CTGAACGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.555

100

0.503
  ssb Glaesserella parasuis strain SC1401

44.444

100

0.503
  ssb Neisseria meningitidis MC58

39.444

100

0.425
  ssb Neisseria gonorrhoeae MS11

39.444

100

0.425

Multiple sequence alignment