Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACETKC_RS12540 Genome accession   NZ_CP169067
Coordinates   2544666..2545166 (-) Length   166 a.a.
NCBI ID   WP_271164175.1    Uniprot ID   -
Organism   Brevundimonas intermedia strain CCUG 45022     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2539666..2550166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACETKC_RS12505 (ACETKC_12505) - 2540205..2540732 (-) 528 WP_271164168.1 DUF1003 domain-containing protein -
  ACETKC_RS12510 (ACETKC_12510) - 2540761..2541681 (-) 921 WP_271164169.1 DMT family transporter -
  ACETKC_RS12515 (ACETKC_12515) - 2541778..2542056 (+) 279 WP_271164170.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  ACETKC_RS12520 (ACETKC_12520) - 2542053..2542433 (+) 381 WP_271164171.1 type II toxin-antitoxin system VapC family toxin -
  ACETKC_RS12525 (ACETKC_12525) - 2542436..2542906 (-) 471 WP_271164172.1 DUF2269 domain-containing protein -
  ACETKC_RS12530 (ACETKC_12530) - 2542903..2544204 (-) 1302 WP_271164173.1 SDR family oxidoreductase -
  ACETKC_RS12535 (ACETKC_12535) - 2544201..2544656 (-) 456 WP_271164174.1 thiol-disulfide oxidoreductase DCC family protein -
  ACETKC_RS12540 (ACETKC_12540) ssb 2544666..2545166 (-) 501 WP_271164175.1 single-stranded DNA-binding protein Machinery gene
  ACETKC_RS12545 (ACETKC_12545) - 2545352..2545777 (-) 426 WP_271164176.1 hypothetical protein -
  ACETKC_RS12550 (ACETKC_12550) - 2545777..2546454 (-) 678 WP_271164177.1 hypothetical protein -
  ACETKC_RS12555 (ACETKC_12555) - 2546546..2549251 (-) 2706 WP_271164178.1 transcriptional regulator -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 17911.80 Da        Isoelectric Point: 5.9696

>NTDB_id=1049689 ACETKC_RS12540 WP_271164175.1 2544666..2545166(-) (ssb) [Brevundimonas intermedia strain CCUG 45022]
MAGSVNKVILVGNLGRDPEIRSMPNGDRIANLSIATSETWRDKSSGERKEKTEWHRVVIFNDNIVKVVENYVKKGSTVYI
EGALQTRKWTDQQGVEKYSTEIVVSRFKGELTMLGGRAEGGASQGGGYGGGGGRGDDDYSSGFSTGGANKPSGPKESYDL
NDDIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=1049689 ACETKC_RS12540 WP_271164175.1 2544666..2545166(-) (ssb) [Brevundimonas intermedia strain CCUG 45022]
ATGGCGGGCAGCGTCAACAAGGTCATTCTGGTCGGCAATCTGGGCCGCGATCCCGAAATCCGGTCCATGCCGAACGGCGA
CCGTATCGCCAACCTGTCGATCGCCACTTCGGAAACCTGGCGCGACAAGTCCTCGGGCGAGCGCAAGGAAAAGACCGAGT
GGCACCGGGTCGTCATCTTCAACGACAACATCGTCAAGGTGGTCGAGAACTATGTGAAGAAGGGCTCGACCGTCTATATC
GAGGGCGCGCTCCAGACCCGCAAATGGACCGACCAGCAGGGCGTCGAGAAATATTCGACCGAGATCGTGGTCAGCCGCTT
CAAGGGTGAACTGACCATGCTGGGCGGCCGCGCGGAAGGCGGCGCCTCGCAAGGCGGCGGTTACGGCGGCGGCGGTGGTC
GCGGCGACGACGACTATTCCTCGGGCTTCTCCACCGGCGGCGCCAACAAGCCGAGCGGTCCCAAGGAAAGCTACGATCTG
AACGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.032

100

0.524
  ssb Vibrio cholerae strain A1552

49.143

100

0.518
  ssb Neisseria meningitidis MC58

39.779

100

0.434
  ssb Neisseria gonorrhoeae MS11

39.779

100

0.434

Multiple sequence alignment