Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACEJ41_RS09960 Genome accession   NZ_CP169056
Coordinates   2166591..2167085 (-) Length   164 a.a.
NCBI ID   WP_374012122.1    Uniprot ID   -
Organism   Pseudoxanthomonas koreensis strain TDY-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2161591..2172085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEJ41_RS09940 (ACEJ41_09940) - 2162904..2163272 (-) 369 WP_374012118.1 response regulator -
  ACEJ41_RS09945 (ACEJ41_09945) - 2163446..2163625 (+) 180 WP_374012119.1 hypothetical protein -
  ACEJ41_RS09950 (ACEJ41_09950) - 2163725..2166136 (+) 2412 WP_374012120.1 heavy metal translocating P-type ATPase -
  ACEJ41_RS09955 (ACEJ41_09955) cueR 2166133..2166594 (+) 462 WP_374012121.1 Cu(I)-responsive transcriptional regulator -
  ACEJ41_RS09960 (ACEJ41_09960) ssb 2166591..2167085 (-) 495 WP_374012122.1 single-stranded DNA-binding protein Machinery gene
  ACEJ41_RS09965 (ACEJ41_09965) - 2167240..2168247 (+) 1008 WP_374012123.1 polyprenyl synthetase family protein -
  ACEJ41_RS09970 (ACEJ41_09970) murD 2168329..2169792 (-) 1464 WP_374012124.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  ACEJ41_RS09975 (ACEJ41_09975) murL 2169773..2171197 (-) 1425 WP_374012125.1 UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L- glutamate epimerase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17921.69 Da        Isoelectric Point: 5.3491

>NTDB_id=1049601 ACEJ41_RS09960 WP_374012122.1 2166591..2167085(-) (ssb) [Pseudoxanthomonas koreensis strain TDY-1]
MARGINKVILVGNLGNDPETKYTQSGMAVTRISLATTSVRKDREGNTQERTEWHRVVFFGKLGEIVAEYLRKGSQVYVEG
EIRYDKYTGQDGQERYSTDIVANEMQMLGGRGGGEGGGERPQRSAAPRREYGGGGQQRNAPAQSPQPAAEGGFNDSFGDD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=1049601 ACEJ41_RS09960 WP_374012122.1 2166591..2167085(-) (ssb) [Pseudoxanthomonas koreensis strain TDY-1]
ATGGCGCGCGGCATCAACAAGGTGATCCTGGTCGGCAACCTCGGCAACGATCCCGAAACCAAGTACACCCAGTCCGGCAT
GGCCGTGACCCGCATCAGCCTGGCCACCACCAGCGTGCGCAAGGACCGCGAGGGCAACACCCAGGAACGCACCGAATGGC
ACCGCGTGGTGTTCTTCGGCAAGCTGGGCGAGATCGTCGCCGAGTACCTGCGCAAGGGCTCGCAGGTGTATGTCGAAGGC
GAGATCCGCTACGACAAGTACACCGGGCAGGACGGCCAGGAGCGCTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTGGGTGGCCGCGGCGGTGGCGAAGGCGGCGGTGAGCGTCCGCAGCGCAGCGCCGCACCGCGCCGCGAGTACGGCGGCG
GTGGCCAGCAGCGCAACGCCCCGGCGCAGTCGCCCCAGCCGGCGGCAGAAGGCGGCTTCAACGACAGCTTCGGCGACGAC
GACATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

45.055

100

0.5
  ssb Neisseria meningitidis MC58

45.714

100

0.488
  ssb Neisseria gonorrhoeae MS11

45.714

100

0.488
  ssb Glaesserella parasuis strain SC1401

42.778

100

0.47

Multiple sequence alignment