Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   ACEJ41_RS02875 Genome accession   NZ_CP169056
Coordinates   628297..629355 (+) Length   352 a.a.
NCBI ID   WP_374013296.1    Uniprot ID   -
Organism   Pseudoxanthomonas koreensis strain TDY-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 623297..634355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEJ41_RS02860 (ACEJ41_02860) - 623332..624621 (+) 1290 WP_374013293.1 citrate synthase -
  ACEJ41_RS02865 (ACEJ41_02865) - 624849..625502 (-) 654 WP_374013294.1 hypothetical protein -
  ACEJ41_RS02870 (ACEJ41_02870) - 625599..628076 (-) 2478 WP_374013295.1 penicillin-binding protein 1A -
  ACEJ41_RS02875 (ACEJ41_02875) pilM 628297..629355 (+) 1059 WP_374013296.1 pilus assembly protein PilM Machinery gene
  ACEJ41_RS02880 (ACEJ41_02880) - 629355..630131 (+) 777 WP_374013297.1 PilN domain-containing protein -
  ACEJ41_RS02885 (ACEJ41_02885) - 630128..630790 (+) 663 WP_374013298.1 type 4a pilus biogenesis protein PilO -
  ACEJ41_RS02890 (ACEJ41_02890) - 630838..631335 (+) 498 WP_374014049.1 pilus assembly protein PilP -
  ACEJ41_RS02895 (ACEJ41_02895) - 631350..633329 (+) 1980 WP_374013299.1 type IV pilus secretin PilQ -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37823.36 Da        Isoelectric Point: 4.4112

>NTDB_id=1049592 ACEJ41_RS02875 WP_374013296.1 628297..629355(+) (pilM) [Pseudoxanthomonas koreensis strain TDY-1]
MGLIPKSQSPLIGVDISSTAVKLLQLSRSGNRYRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAATRSGTRIKHAAAA
VAGSAVITKIIPMPSDLDEGDMEAQVELEAVNYIPYPIEEVNLDFEVLGPMPNNPEMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALIADGLSVGREGVVALVDIGATMTTLNVLRDGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGQAKRQGGLPEAYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDQIVLAGGCAAIVGLPEMVEEQLGVPTLVANPLA
QMTLGPRVQAHALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1049592 ACEJ41_RS02875 WP_374013296.1 628297..629355(+) (pilM) [Pseudoxanthomonas koreensis strain TDY-1]
GTGGGGCTCATCCCGAAAAGCCAGTCGCCGCTGATCGGCGTCGACATCAGTTCGACTGCGGTCAAGCTGCTGCAGCTGTC
GCGCAGCGGCAACCGTTATCGCGTGGAGCACTACGCGGTCGAGCCATTGCCACCCAATGCGGTGGTCGAGAAGAACATCG
TCGAGGTCGAGGCGGTGGGTGAGGCCATTCGCCGCGCCGCCACCCGGTCCGGCACCCGGATCAAGCATGCCGCCGCGGCG
GTGGCCGGTTCGGCGGTGATCACCAAGATCATCCCGATGCCTTCCGACCTGGACGAGGGCGACATGGAAGCCCAGGTCGA
ACTCGAGGCGGTCAACTACATCCCGTACCCGATCGAGGAAGTGAACCTCGACTTCGAGGTGCTCGGGCCCATGCCCAACA
ACCCGGAAATGGTCCAGGTGCTGCTGGCTGCCTCGCGTTCGGAGAACGTCGAGCTGCGCCAGTCGGCACTGGAGCTTGGC
GGGCTGACGGCCAAGGTGATGGATGTGGAAGCGTTCGCGGTTGAGAACGCCTTCGCCCTGATCGCCGATGGCCTGTCGGT
GGGCCGCGAGGGCGTGGTCGCGCTGGTCGACATCGGCGCCACCATGACCACCCTCAACGTGCTGCGCGACGGCCGCAGCC
TCTACAGCCGCGAGCAGGTGTTCGGCGGCAAGCAGCTGACCGACGAGGTCATGCGCCGCTACGGCCTGACCTACGAGGAA
GCCGGCCAGGCCAAGCGCCAGGGCGGCCTGCCGGAGGCCTACGAGGTCGAGGTGCTGGAGCCGTTCAAGGAAGCCACCGT
CCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTACGCCGGCAGCGAGTTCAACCGGGTCGACCAGATCGTCCTGGCCGGCG
GCTGCGCGGCCATCGTCGGCCTGCCCGAGATGGTCGAGGAGCAACTGGGCGTGCCCACCCTGGTGGCCAACCCGCTGGCG
CAGATGACCCTCGGTCCGCGCGTGCAGGCCCATGCCCTGGCCCAGGATGCGCCGGCGCTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.136

100

0.511
  comM Acinetobacter nosocomialis M2

50.852

100

0.509
  comM Acinetobacter baylyi ADP1

50.284

100

0.503
  pilM Legionella pneumophila strain ERS1305867

46.154

99.716

0.46

Multiple sequence alignment