Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACEQ85_RS08980 Genome accession   NZ_CP168966
Coordinates   1902766..1903353 (+) Length   195 a.a.
NCBI ID   WP_005066890.1    Uniprot ID   -
Organism   Acinetobacter pittii strain LS-AP     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1897766..1908353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEQ85_RS08955 (ACEQ85_08955) - 1897844..1898644 (-) 801 WP_373883679.1 SDR family NAD(P)-dependent oxidoreductase -
  ACEQ85_RS08960 (ACEQ85_08960) - 1898748..1899119 (-) 372 WP_373883680.1 MerR family transcriptional regulator -
  ACEQ85_RS08965 (ACEQ85_08965) tenA 1899184..1899858 (-) 675 WP_039255497.1 thiaminase II -
  ACEQ85_RS08970 (ACEQ85_08970) - 1900121..1901203 (+) 1083 WP_320139505.1 DUF475 domain-containing protein -
  ACEQ85_RS08975 (ACEQ85_08975) yajR 1901350..1902714 (+) 1365 WP_005078603.1 MFS transporter -
  ACEQ85_RS08980 (ACEQ85_08980) ssb 1902766..1903353 (+) 588 WP_005066890.1 single-stranded DNA-binding protein Machinery gene
  ACEQ85_RS08985 (ACEQ85_08985) - 1903394..1903717 (-) 324 WP_373883681.1 AzlD domain-containing protein -
  ACEQ85_RS08990 (ACEQ85_08990) - 1903714..1904409 (-) 696 WP_005804464.1 AzlC family ABC transporter permease -
  ACEQ85_RS08995 (ACEQ85_08995) ydcN 1904478..1905026 (+) 549 WP_063097715.1 helix-turn-helix domain-containing protein -
  ACEQ85_RS09000 (ACEQ85_09000) - 1905081..1905524 (-) 444 WP_139120927.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACEQ85_RS09005 (ACEQ85_09005) - 1905849..1906256 (-) 408 WP_373883682.1 EVE domain-containing protein -
  ACEQ85_RS09010 (ACEQ85_09010) - 1906253..1906714 (-) 462 WP_373883683.1 hypothetical protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21223.01 Da        Isoelectric Point: 6.4822

>NTDB_id=1048987 ACEQ85_RS08980 WP_005066890.1 1902766..1903353(+) (ssb) [Acinetobacter pittii strain LS-AP]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYGQNSGGYGNQG
GFGNGGSNPQAGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=1048987 ACEQ85_RS08980 WP_005066890.1 1902766..1903353(+) (ssb) [Acinetobacter pittii strain LS-AP]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAATTTTCAATCGCGACAAGTGAAGCTTGGACTGATAAAAATACTGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTCTTGCGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCACTACGTACACGTCAGTGGACAGACCAAAATGGCCAAGAGCGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCGCTGGCGGTAATGATTTTAACCAACCACGTTTTAACGCACCTCAAC
AAGGTGGTAATGGTTATCAAAATAATAACAACCAAGGTGGCGGCTATGGCCAAAACAGCGGTGGTTATGGTAACCAAGGT
GGTTTCGGTAATGGTGGAAGCAACCCTCAAGCGGGTGGTTTTGCGCCTAAAGCACCACAACAACCAGCTTCTGCACCAGC
TGATTTAGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.475

100

0.544
  ssb Vibrio cholerae strain A1552

44.5

100

0.456
  ssb Neisseria meningitidis MC58

39.394

100

0.4
  ssb Neisseria gonorrhoeae MS11

37.879

100

0.385

Multiple sequence alignment