Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   U8955_RS04800 Genome accession   NZ_OY769914
Coordinates   955717..956397 (+) Length   226 a.a.
NCBI ID   WP_038805192.1    Uniprot ID   -
Organism   Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 950717..961397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U8955_RS04790 (SDENT7746_04795) - 951528..953198 (+) 1671 WP_038805189.1 formate--tetrahydrofolate ligase -
  U8955_RS04795 (SDENT7746_04800) pcrA 953383..955674 (+) 2292 WP_038805190.1 DNA helicase PcrA -
  U8955_RS04800 (SDENT7746_04805) radC 955717..956397 (+) 681 WP_038805192.1 RadC family protein Machinery gene
  U8955_RS04805 (SDENT7746_04810) - 956394..957083 (-) 690 WP_038805193.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  U8955_RS04810 (SDENT7746_04815) - 957099..957740 (-) 642 WP_000653419.1 redox-sensing transcriptional repressor Rex -
  U8955_RS04815 (SDENT7746_04820) - 957829..958038 (-) 210 WP_038805649.1 DUF4649 family protein -
  U8955_RS04820 (SDENT7746_04825) - 958045..958392 (-) 348 WP_000863520.1 DUF1831 domain-containing protein -
  U8955_RS04825 (SDENT7746_04830) - 958397..959512 (-) 1116 WP_038805194.1 cysteine desulfurase family protein -
  U8955_RS04830 (SDENT7746_04835) - 959522..960481 (-) 960 WP_038805195.1 ribose-phosphate diphosphokinase -
  U8955_RS04835 (SDENT7746_04840) - 960593..961162 (-) 570 WP_038805196.1 CYTH domain-containing protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25602.57 Da        Isoelectric Point: 7.1576

>NTDB_id=1047516 U8955_RS04800 WP_038805192.1 955717..956397(+) (radC) [Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746]
MYSISFQEDSLLPRERLVKEGVEALSNQELLAILLRTGTRQANVFEIAQKVLNSLNSLTDLKKMTLQELQSLSGIGRIKA
IELQAVIELGHRIHKHETLEMESILSSQKLAKKMQHELGDKKQEHLVALYLNTQNQIIHQQTIFIGSATRSIAEPREILH
YAIKHMATSVILVHNHPSGAVAPSRNDDHVTKLVKEACELMGLVFLDHLIVSHSDYFSYREKTDLI

Nucleotide


Download         Length: 681 bp        

>NTDB_id=1047516 U8955_RS04800 WP_038805192.1 955717..956397(+) (radC) [Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746]
ATGTATAGTATTTCATTCCAAGAAGATTCACTTTTACCGAGAGAAAGACTGGTTAAAGAAGGAGTAGAGGCTCTGAGCAA
TCAAGAGCTACTAGCTATTCTGCTCAGAACCGGAACGCGTCAGGCTAATGTTTTTGAAATCGCTCAGAAAGTCTTGAATA
GCCTTAATAGTCTAACTGATCTAAAAAAAATGACCCTGCAGGAATTGCAGAGCCTTTCGGGTATTGGACGTATTAAAGCC
ATTGAATTACAAGCTGTGATTGAACTAGGGCATCGTATTCACAAACATGAAACACTTGAGATGGAAAGTATTCTCAGCAG
TCAAAAGCTGGCCAAGAAAATGCAACATGAACTTGGCGATAAAAAACAAGAGCACCTAGTGGCGCTCTATCTCAATACTC
AAAATCAAATCATTCATCAGCAGACCATCTTTATCGGATCTGCAACACGCAGTATTGCTGAACCACGGGAAATCCTTCAC
TATGCCATCAAGCATATGGCCACCTCTGTGATTCTCGTTCATAACCATCCATCAGGCGCTGTAGCACCCAGTCGAAATGA
TGACCATGTCACTAAGCTAGTCAAGGAAGCCTGTGAACTGATGGGGCTGGTGTTTCTGGATCATCTGATTGTCTCTCACT
CTGATTACTTTAGTTACCGTGAAAAGACGGATTTGATTTAG

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(13-81)

RadC-like JAB domain (RadC)

(106-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

94.248

100

0.942
  radC Streptococcus pneumoniae R6

93.805

100

0.938
  radC Streptococcus pneumoniae D39

93.805

100

0.938
  radC Streptococcus gordonii str. Challis substr. CH1

75.664

100

0.757
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

47.143

92.92

0.438