Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   NTHIC486_RS03380 Genome accession   NZ_CP007471
Coordinates   664439..665446 (+) Length   335 a.a.
NCBI ID   WP_038440776.1    Uniprot ID   -
Organism   Haemophilus influenzae strain C486     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 659439..670446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NTHIC486_RS03355 (NTHIC486_00671) aspS 660122..661888 (+) 1767 WP_044345397.1 aspartate--tRNA ligase -
  NTHIC486_RS03360 (NTHIC486_00672) nudB 661910..662383 (+) 474 WP_011271985.1 dihydroneopterin triphosphate diphosphatase -
  NTHIC486_RS03365 (NTHIC486_00673) - 662395..663135 (+) 741 WP_005649034.1 YebC/PmpR family DNA-binding transcriptional regulator -
  NTHIC486_RS03370 (NTHIC486_00674) ruvC 663182..663754 (+) 573 WP_044345399.1 crossover junction endodeoxyribonuclease RuvC -
  NTHIC486_RS03375 (NTHIC486_00675) ruvA 663817..664431 (+) 615 WP_038440774.1 Holliday junction branch migration protein RuvA -
  NTHIC486_RS03380 (NTHIC486_00676) ruvB 664439..665446 (+) 1008 WP_038440776.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  NTHIC486_RS03385 (NTHIC486_00677) - 665498..665785 (-) 288 WP_011271982.1 DUF5339 domain-containing protein -
  NTHIC486_RS03390 (NTHIC486_00678) xerD 665958..666851 (-) 894 WP_044345401.1 site-specific tyrosine recombinase XerD -
  NTHIC486_RS03395 (NTHIC486_00679) - 666881..668047 (-) 1167 WP_005660002.1 3-phenylpropionate MFS transporter -
  NTHIC486_RS03400 (NTHIC486_00680) proC 668047..668862 (-) 816 WP_005686744.1 pyrroline-5-carboxylate reductase -
  NTHIC486_RS03405 (NTHIC486_00681) rdgC 668928..669836 (+) 909 WP_011961740.1 recombination-associated protein RdgC -
  NTHIC486_RS03410 (NTHIC486_00682) ruvX 669886..670305 (-) 420 WP_005686741.1 Holliday junction resolvase RuvX -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37090.44 Da        Isoelectric Point: 4.7793

>NTDB_id=104696 NTHIC486_RS03380 WP_038440776.1 664439..665446(+) (ruvB) [Haemophilus influenzae strain C486]
MIEADRIISGQAKLDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVARSADCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGG
IISINVAKQALSMLDVDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSQTYRHFGLQKLSD

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=104696 NTHIC486_RS03380 WP_038440776.1 664439..665446(+) (ruvB) [Haemophilus influenzae strain C486]
ATGATTGAAGCAGATAGAATTATTAGCGGGCAAGCTAAGCTTGATGAAGATGTTATCGACCGTGCTATTCGTCCTAAACT
ATTAGCAGATTATGTTGGGCAGCCGCAAGTACGCGAGCAGATGGATATTTTCATCAAGGCAGCCAAACTACGTCAAGATG
CCTTAGATCATTTATTGATTTTTGGCCCTCCTGGCTTGGGAAAAACAACGCTTGCTAATATTGTGGCAAATGAAATGGGC
GTGAATATTCGTACGACGTCAGGGCCTGTATTAGAAAAAGCGGGCGATTTGGCTGCAATGCTTACTAATCTTGAACCGCA
TGATGTGTTATTTATTGATGAAATCCATCGACTTTCCCCTGCTATTGAAGAAGTCCTTTATCCAGCAATGGAAGACTATC
AGTTGGATATTATGATTGGCGAAGGACCCGCTGCTCGTTCCATTAAATTAGATTTGCCCCCTTTTACTTTGGTTGGTGCG
ACCACTAGAGCGGGTTCTTTGACTTCTCCATTGCGTGATCGTTTTGGTATTGTGCAACGTTTGGAATTCTATTCTGTAGA
AGATTTAACATCTATCGTTGCAAGAAGTGCGGACTGTTTAAATCTTGAATTAGAACAACAAGCCGCTTTTGAGGTGGCTC
GTCGTTCACGAGGCACGCCTCGAATTGCAAACCGTTTATTACGACGTGTGCGTGATTATGCAGATGTACGTAATGGCGGT
ATTATTTCTATAAATGTGGCAAAACAAGCGCTTTCAATGCTAGATGTAGACGATGCTGGATTTGATTATTTAGATAGAAA
GTTGTTGTCTGCAGTTATTGAGCGTTTTGATGGTGGCCCTGTGGGGCTAGATAATCTTGCTGCTGCAATTGGCGAAGAAC
GTGATACCATTGAAGATGTTTTAGAGCCTTATTTGATTCAACAGGGGTTTCTACAAAGAACGCCGCGTGGCCGTATTGCA
ACATCGCAAACTTATCGTCATTTTGGTTTGCAGAAATTATCAGACTAG

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)

RuvB AAA lid domain (AAA_lid_4)

(184-257)

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

62.385

97.612

0.609
  ruvB Streptococcus pneumoniae TIGR4

57.975

97.313

0.564
  ruvB Streptococcus pneumoniae R6

57.975

97.313

0.564
  ruvB Streptococcus pneumoniae D39

57.975

97.313

0.564
  ruvB Helicobacter pylori 26695

54.633

93.433

0.51
  ruvB Synechocystis sp. PCC 6803

55.016

92.239

0.507