Detailed information NTG0104568

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: CH52_RS11410
• Genome accession: NZ_CP007454
• Coordinates: 2212985..2213587 (+)
• Length: 200 a.a.
• NCBI ID: WP_000271550.1
• Uniprot ID: P66748
• Organism: Staphylococcus aureus strain 502A isolate RN6607
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2207985..2218587

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CH52_RS11370	-	2208001..2208120 (+)	120	WP_000840602.1	hypothetical protein	-
CH52_RS11375 (CH52_10820)	mreC	2208319..2209161 (+)	843	WP_000911041.1	rod shape-determining protein MreC	-
CH52_RS11380 (CH52_10825)	mreD	2209161..2209691 (+)	531	WP_001259925.1	rod shape-determining protein MreD	-
CH52_RS11385 (CH52_10830)	rplU	2209927..2210235 (+)	309	WP_000457386.1	50S ribosomal protein L21	-
CH52_RS11390 (CH52_10835)	-	2210241..2210561 (+)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
CH52_RS11395 (CH52_10840)	rpmA	2210573..2210857 (+)	285	WP_000916187.1	50S ribosomal protein L27	-
CH52_RS11400 (CH52_10845)	obgE	2211211..2212503 (+)	1293	WP_000496100.1	GTPase ObgE	-
CH52_RS11405 (CH52_10850)	-	2212516..2212971 (+)	456	WP_000368902.1	ACT domain-containing protein	-
CH52_RS11410 (CH52_10855)	ruvA	2212985..2213587 (+)	603	WP_000271550.1	Holliday junction branch migration protein RuvA	Machinery gene
CH52_RS11415 (CH52_10860)	ruvB	2213619..2214623 (+)	1005	WP_001005768.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
CH52_RS11420 (CH52_10865)	queA	2214625..2215650 (+)	1026	WP_001019178.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
CH52_RS11425 (CH52_10870)	tgt	2215673..2216812 (+)	1140	WP_001112045.1	tRNA guanosine(34) transglycosylase Tgt	-
CH52_RS11430 (CH52_10875)	yajC	2216831..2217091 (+)	261	WP_001160682.1	preprotein translocase subunit YajC	-

Sequence

Protein

• Length: 200 a.a.
• Molecular weight: 22281.50 Da
• Isoelectric Point: 6.1244

>NTDB_id=104568 CH52_RS11410 WP_000271550.1 2212985..2213587(+) (ruvA) [Staphylococcus aureus strain 502A isolate RN6607]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIRTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide

• Length: 603 bp

>NTDB_id=104568 CH52_RS11410 WP_000271550.1 2212985..2213587(+) (ruvA) [Staphylococcus aureus strain 502A isolate RN6607]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCGTACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

• RuvA, C-terminal domain (RuvA_C) (156-197)

• Helix-hairpin-helix domain (HHH_5) (71-128)

• RuvA N terminal domain (RuvA_N) (1-61)

3D structure

• AlphaFold DB: P66748

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Streptococcus pneumoniae TIGR4	46.231	99.5	0.46
ruvA	Streptococcus pneumoniae R6	45.729	99.5	0.455
ruvA	Streptococcus pneumoniae D39	45.729	99.5	0.455
ruvA	Bacillus subtilis subsp. subtilis str. 168	43.216	99.5	0.43