Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ACI6O7_RS05400 Genome accession   NZ_OY725152
Coordinates   1077279..1077959 (+) Length   226 a.a.
NCBI ID   WP_251900371.1    Uniprot ID   -
Organism   Lactococcus lactis strain IMDO WA12L8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1072279..1082959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI6O7_RS05380 (LLWA12L8_FAMOGCFE_01089) - 1072644..1073159 (+) 516 WP_058203693.1 DUF2127 domain-containing protein -
  ACI6O7_RS05385 (LLWA12L8_FAMOGCFE_01090) - 1073163..1074488 (+) 1326 WP_021722534.1 cell wall metabolism sensor histidine kinase WalK -
  ACI6O7_RS05390 (LLWA12L8_FAMOGCFE_01091) - 1074495..1075151 (+) 657 WP_404379550.1 phosphatase PAP2 family protein -
  ACI6O7_RS05395 (LLWA12L8_FAMOGCFE_01092) glmS 1075332..1077149 (+) 1818 WP_058203696.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  ACI6O7_RS05400 (LLWA12L8_FAMOGCFE_01093) radC 1077279..1077959 (+) 681 WP_251900371.1 DNA repair protein RadC Machinery gene
  ACI6O7_RS05405 (LLWA12L8_FAMOGCFE_01094) - 1078046..1078696 (-) 651 WP_021464703.1 redox-sensing transcriptional repressor Rex -
  ACI6O7_RS05410 (LLWA12L8_FAMOGCFE_01095) - 1078921..1079313 (+) 393 WP_033900228.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  ACI6O7_RS05415 (LLWA12L8_FAMOGCFE_01096) - 1079490..1081397 (+) 1908 WP_404379553.1 ABC-F family ATP-binding cassette domain-containing protein -
  ACI6O7_RS05420 (LLWA12L8_FAMOGCFE_01097) - 1081571..1082428 (+) 858 WP_012897688.1 XRE/MutR family transcriptional regulator -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25815.66 Da        Isoelectric Point: 7.4313

>NTDB_id=1045596 ACI6O7_RS05400 WP_251900371.1 1077279..1077959(+) (radC) [Lactococcus lactis strain IMDO WA12L8]
MYELKENPYPMQPRERLEFLGEECLSDVELLAILLRTGTKKYSSLNLALEILQHFETLDNLRKASINELREISGIGLAKS
IEIRAMIEFGKRIQTTNRKRYGQVLSSKEYGLSLAFEMQNFEQEHLVATYLDGQNRIIEKKTIFIGAVNQATASPREILY
HAIKNLSVGLLVAHNHPSGNLRPSQADKIFTDKIKKSCEDVGINFIDHIIVGAGNYFSFREEEIRK

Nucleotide


Download         Length: 681 bp        

>NTDB_id=1045596 ACI6O7_RS05400 WP_251900371.1 1077279..1077959(+) (radC) [Lactococcus lactis strain IMDO WA12L8]
ATGTATGAACTAAAAGAAAATCCGTATCCGATGCAACCTAGGGAACGCTTAGAATTTTTAGGAGAAGAGTGCTTGTCTGA
TGTTGAGCTGTTAGCGATATTATTGCGAACAGGGACAAAAAAATACTCATCATTAAATTTGGCCTTGGAAATTCTTCAAC
ATTTTGAAACTTTGGATAATTTGCGCAAAGCTTCGATTAATGAACTCAGAGAAATTTCAGGCATTGGACTGGCGAAATCC
ATTGAAATTCGAGCAATGATTGAATTTGGAAAAAGGATACAGACCACTAATAGAAAACGTTACGGTCAAGTTTTGAGTTC
CAAAGAATATGGCTTGAGTCTTGCTTTTGAAATGCAAAATTTTGAGCAAGAGCATCTTGTGGCGACTTATTTAGATGGTC
AAAATCGAATTATTGAAAAAAAGACAATTTTTATAGGGGCGGTTAATCAGGCAACTGCAAGCCCTAGAGAGATTCTTTAT
CATGCAATAAAAAATCTCTCAGTAGGACTGTTAGTTGCACATAATCATCCCTCAGGAAATTTACGACCCAGTCAGGCTGA
TAAAATATTTACTGACAAAATAAAAAAATCTTGTGAGGATGTGGGGATCAATTTTATTGACCATATTATTGTAGGGGCTG
GTAATTATTTTAGTTTTCGGGAAGAAGAGATCAGAAAATGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(115-223)

UPF0758 N-terminal (UPF0758_N)

(5-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

45.946

98.23

0.451
  radC Streptococcus pneumoniae R6

45.946

98.23

0.451
  radC Streptococcus pneumoniae D39

45.946

98.23

0.451
  radC Streptococcus gordonii str. Challis substr. CH1

45.495

98.23

0.447
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

40.541

98.23

0.398

Multiple sequence alignment