Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACEPSY_RS03250 Genome accession   NZ_CP168681
Coordinates   658529..659080 (-) Length   183 a.a.
NCBI ID   WP_057784112.1    Uniprot ID   A0A176TM93
Organism   Pediococcus parvulus strain FUA 3699     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 653529..664080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPSY_RS03230 - 654590..655777 (+) 1188 WP_068805313.1 MFS transporter -
  ACEPSY_RS03235 - 655945..657306 (-) 1362 WP_260267505.1 FAD-dependent oxidoreductase -
  ACEPSY_RS03240 - 657337..658017 (-) 681 WP_057784108.1 EAL domain-containing protein -
  ACEPSY_RS03245 rpsR 658268..658507 (-) 240 WP_057784110.1 30S ribosomal protein S18 -
  ACEPSY_RS03250 ssb 658529..659080 (-) 552 WP_057784112.1 single-stranded DNA-binding protein Machinery gene
  ACEPSY_RS03255 rpsF 659121..659411 (-) 291 WP_068805307.1 30S ribosomal protein S6 -
  ACEPSY_RS03260 gyrA 659605..662088 (-) 2484 WP_375710191.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 19858.23 Da        Isoelectric Point: 4.5070

>NTDB_id=1044927 ACEPSY_RS03250 WP_057784112.1 658529..659080(-) (ssb) [Pediococcus parvulus strain FUA 3699]
MINRTVLVGRLTRDPDLRYTNSGAAVATFTVAVNRQFTNAQGEREADFINCVIWRKAAENFSNFTHKGSLVGVDGRIQTR
SYENQQGVRVYVTEVVVENFSLLESRAQSEQRQQQGGNTGFHDNAPQSSGNSNPFDAGQGSNTNSNNSQSSSNGSASSAS
SNPNDPFADNGEQIDISDDDLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=1044927 ACEPSY_RS03250 WP_057784112.1 658529..659080(-) (ssb) [Pediococcus parvulus strain FUA 3699]
ATGATAAACCGAACAGTTCTTGTTGGACGCTTAACCAGAGATCCCGATTTACGATACACCAACAGCGGTGCTGCAGTCGC
TACCTTCACAGTGGCAGTTAATCGTCAGTTTACGAACGCTCAAGGAGAGCGTGAAGCCGATTTTATTAACTGTGTGATTT
GGCGAAAAGCTGCAGAGAACTTCTCTAATTTTACCCATAAAGGCTCGTTGGTTGGAGTAGATGGACGGATTCAAACCCGT
TCGTACGAAAATCAACAAGGCGTCCGAGTATATGTTACAGAAGTTGTTGTTGAAAACTTTTCATTGTTGGAATCCCGTGC
TCAATCTGAGCAACGTCAACAGCAAGGTGGCAATACGGGATTTCACGACAATGCTCCTCAATCATCCGGTAATAGCAATC
CGTTTGATGCTGGGCAAGGAAGTAACACTAATAGCAATAACAGTCAGAGCAGTAGCAATGGCAGTGCTTCTAGTGCAAGT
TCTAATCCTAACGATCCGTTTGCAGATAACGGCGAACAAATTGATATTTCCGATGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A176TM93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

65.054

100

0.661
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.676

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

60

60.109

0.361

Multiple sequence alignment