Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   QOY19_RS09905 Genome accession   NZ_OX595791
Coordinates   1962693..1963283 (-) Length   196 a.a.
NCBI ID   WP_000272490.1    Uniprot ID   Q3JYM8
Organism   Streptococcus agalactiae isolate MRI Z2-270     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1957693..1968283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOY19_RS09875 spx 1958083..1958481 (-) 399 WP_000591161.1 transcriptional regulator Spx -
  QOY19_RS09880 recA 1958697..1959836 (-) 1140 WP_001085741.1 recombinase RecA Machinery gene
  QOY19_RS09885 cinA 1959910..1961169 (-) 1260 WP_001200975.1 competence/damage-inducible protein A Machinery gene
  QOY19_RS09890 - 1961258..1961665 (-) 408 Protein_1876 DNA-3-methyladenine glycosylase I -
  QOY19_RS09895 - 1961698..1962503 (+) 806 WP_088181596.1 IS5-like element IS1381A family transposase -
  QOY19_RS09900 - 1962518..1962670 (-) 153 Protein_1878 DNA-3-methyladenine glycosylase I -
  QOY19_RS09905 ruvA 1962693..1963283 (-) 591 WP_000272490.1 Holliday junction branch migration protein RuvA Machinery gene
  QOY19_RS09910 - 1963285..1964517 (-) 1233 WP_000657472.1 MFS transporter -
  QOY19_RS09915 hexB 1964549..1966522 (-) 1974 WP_000034614.1 DNA mismatch repair endonuclease MutL Machinery gene
  QOY19_RS09920 - 1966748..1966951 (+) 204 WP_000191849.1 cold shock domain-containing protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21696.94 Da        Isoelectric Point: 5.7488

>NTDB_id=1044897 QOY19_RS09905 WP_000272490.1 1962693..1963283(-) (ruvA) [Streptococcus agalactiae isolate MRI Z2-270]
MYDYIKGKLSKITAKFIVVETAGLGYVIYVANPYSFSGYVNQEVTIYLHQVIRDDAHLLFGFHTENEKEIFLNLISVSGI
GPTTALAIIAVDDNEGLVSAIDNSDIKYLTKFPKIGKKTAQQMILDLSGKFVEASGESATSRKVSSEQNSNLEEAMEALL
ALGYKATELKKVKAFFEGTNETVEQYIKSSLKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=1044897 QOY19_RS09905 WP_000272490.1 1962693..1963283(-) (ruvA) [Streptococcus agalactiae isolate MRI Z2-270]
ATGTACGATTATATTAAAGGAAAATTGAGTAAAATAACAGCTAAATTTATTGTTGTGGAAACAGCTGGATTGGGATACGT
GATATATGTGGCAAATCCCTACTCTTTTTCAGGTTACGTTAATCAAGAAGTTACCATCTACTTACATCAAGTCATTCGCG
ATGATGCACATCTTTTATTTGGTTTTCATACGGAAAATGAAAAAGAAATTTTTCTTAATTTAATTTCAGTATCAGGAATT
GGTCCAACGACCGCTTTAGCAATTATTGCAGTCGATGACAATGAAGGTCTCGTAAGTGCCATTGATAATAGTGATATTAA
GTATTTGACTAAATTTCCAAAGATAGGAAAAAAAACAGCACAACAGATGATCCTTGATTTGTCAGGGAAGTTTGTAGAAG
CTTCTGGTGAGAGTGCGACTAGTCGTAAGGTTAGCTCTGAGCAGAATAGCAATCTTGAAGAAGCTATGGAAGCTTTGTTA
GCGTTGGGGTATAAGGCGACTGAATTGAAAAAAGTAAAAGCCTTTTTTGAAGGTACGAACGAGACTGTGGAGCAATACAT
CAAATCTAGTTTGAAGATGTTGATGAAATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(151-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3JYM8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

67.513

100

0.679
  ruvA Streptococcus pneumoniae D39

67.513

100

0.679
  ruvA Streptococcus pneumoniae TIGR4

67.005

100

0.673
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.409

100

0.408