Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACEPSX_RS00310 Genome accession   NZ_CP168679
Coordinates   32624..33994 (-) Length   456 a.a.
NCBI ID   WP_395386935.1    Uniprot ID   -
Organism   Pediococcus parvulus strain FUA 30084     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 27624..38994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPSX_RS00290 - 27959..28378 (-) 420 WP_057784524.1 Mini-ribonuclease 3 -
  ACEPSX_RS00295 cysS 28385..29791 (-) 1407 WP_260274835.1 cysteine--tRNA ligase -
  ACEPSX_RS00300 gltX 29901..31391 (-) 1491 WP_057784526.1 glutamate--tRNA ligase -
  ACEPSX_RS00305 - 31475..32593 (-) 1119 WP_068806213.1 PIN/TRAM domain-containing protein -
  ACEPSX_RS00310 radA 32624..33994 (-) 1371 WP_395386935.1 DNA repair protein RadA Machinery gene
  ACEPSX_RS00315 - 34076..34612 (-) 537 WP_057784529.1 dUTP diphosphatase -
  ACEPSX_RS00320 - 34811..35137 (+) 327 WP_057784530.1 GNAT family N-acetyltransferase -
  ACEPSX_RS00325 rpiA 35124..35810 (+) 687 WP_057784531.1 ribose-5-phosphate isomerase RpiA -
  ACEPSX_RS00330 - 35911..37245 (+) 1335 WP_229923094.1 C1 family peptidase -
  ACEPSX_RS00335 - 37349..38242 (-) 894 WP_395386934.1 IS3 family transposase -
  ACEPSX_RS00340 - 38239..38913 (-) 675 WP_100078201.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50121.60 Da        Isoelectric Point: 7.7961

>NTDB_id=1044896 ACEPSX_RS00310 WP_395386935.1 32624..33994(-) (radA) [Pediococcus parvulus strain FUA 30084]
MAKEKTQFVCQNCGYVSPRFLGRCPSCGQWNTLVEERVESEKVNHKARVSFEGNRAKPQLISQVDMSETPRVKTGLDEFN
RVLGGGIVTGSLVLIGGDPGIGKSTLLLQISGQLSETKHRVLYVSGEESAAQIKMRADRLHVASENFYLFPETDMNSIQA
AIKELKPTYVIIDSIQTMQEPDIQSAVGSVAQVREITAELMQIAKTNNITIFIVGHVTKGGAIAGPKILEHMVDTVLYFE
GDLHHTYRILRAVKNRFGSTNELGIFEMRETGLQEVANPSEIFLEERLKDATGSAIVVSMEGTRPILVEVQALITPTTFG
NAKRTASGLDHNRVSLIMAVLEKRANFLLQNQDAYLKAAGGVKLNEPAIDLAIAISIASSYRDKGTDPMDAFVGEIGLTG
EIRRVNRIEQRVAEAQKLGFKRIYLPKNNLQGWTPPTGIEVVGVATLSDALRRIFK

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=1044896 ACEPSX_RS00310 WP_395386935.1 32624..33994(-) (radA) [Pediococcus parvulus strain FUA 30084]
ATGGCAAAAGAAAAGACTCAGTTTGTCTGTCAAAATTGTGGCTACGTTTCGCCTCGATTTTTAGGCCGGTGTCCAAGTTG
TGGTCAATGGAACACTTTGGTTGAAGAGCGGGTTGAAAGCGAAAAAGTTAATCACAAAGCTCGAGTTAGTTTCGAAGGTA
ACCGAGCCAAACCGCAACTAATTAGCCAAGTTGATATGAGTGAAACTCCCCGTGTAAAAACAGGTTTGGATGAGTTTAAC
CGAGTTTTAGGCGGTGGTATTGTAACTGGATCACTTGTTTTGATTGGTGGTGATCCAGGAATCGGAAAATCAACATTGCT
TTTGCAAATTTCTGGTCAACTAAGCGAAACAAAGCATCGCGTTTTATATGTATCTGGGGAAGAAAGTGCTGCCCAAATCA
AAATGCGTGCCGACCGTTTACATGTTGCTAGTGAGAATTTTTATTTGTTCCCAGAAACTGACATGAATAGCATCCAAGCG
GCTATCAAAGAACTCAAACCAACCTATGTGATTATCGATTCGATTCAGACAATGCAGGAGCCGGATATCCAATCTGCTGT
TGGTAGTGTAGCGCAAGTTCGTGAGATCACTGCCGAACTGATGCAGATTGCAAAAACTAACAATATTACAATTTTTATTG
TCGGTCATGTGACTAAGGGCGGTGCAATTGCGGGGCCGAAGATCTTGGAGCATATGGTGGATACAGTTCTTTACTTTGAA
GGCGATTTGCATCACACTTATCGGATTCTTCGGGCCGTAAAGAACCGATTTGGTTCAACTAATGAACTGGGAATTTTTGA
AATGCGTGAAACGGGTTTGCAAGAGGTTGCCAATCCTTCAGAAATTTTCTTGGAAGAACGGCTAAAAGATGCTACGGGTT
CCGCCATCGTGGTTTCAATGGAAGGGACACGACCAATTTTGGTTGAAGTCCAAGCTTTAATCACGCCCACTACTTTTGGT
AATGCAAAACGCACAGCTAGTGGACTGGATCATAACCGAGTTTCTTTGATTATGGCAGTTTTGGAAAAACGGGCTAATTT
TTTGCTGCAGAACCAAGATGCGTATTTAAAAGCTGCCGGTGGTGTCAAGTTGAATGAACCGGCAATTGATTTAGCTATTG
CAATTAGTATTGCGTCTAGTTACCGCGATAAGGGAACGGACCCGATGGACGCATTTGTGGGTGAAATTGGATTGACGGGT
GAAATTCGCCGGGTAAACCGAATTGAACAACGGGTGGCTGAGGCTCAAAAGCTGGGCTTCAAACGTATTTATTTGCCTAA
AAACAACCTTCAAGGATGGACACCACCAACTGGTATCGAGGTTGTGGGTGTCGCAACTTTGTCAGATGCGTTGCGAAGAA
TTTTTAAATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(73-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

67.912

99.781

0.678
  radA Streptococcus mitis NCTC 12261

67.692

99.781

0.675
  radA Streptococcus pneumoniae Rx1

67.692

99.781

0.675
  radA Streptococcus pneumoniae TIGR4

67.692

99.781

0.675
  radA Streptococcus pneumoniae D39

67.692

99.781

0.675
  radA Streptococcus pneumoniae R6

67.692

99.781

0.675
  radA Bacillus subtilis subsp. subtilis str. 168

67.108

99.342

0.667

Multiple sequence alignment