Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACCB35_RS22245 Genome accession   NZ_CP168654
Coordinates   4451999..4452511 (-) Length   170 a.a.
NCBI ID   WP_044340263.1    Uniprot ID   -
Organism   Rossellomorea sp. FM04394     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4446999..4457511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCB35_RS22225 rplI 4447912..4448358 (-) 447 WP_044340261.1 50S ribosomal protein L9 -
  ACCB35_RS22230 - 4448355..4450328 (-) 1974 WP_044340262.1 DHH family phosphoesterase -
  ACCB35_RS22235 - 4450355..4451278 (-) 924 WP_374055334.1 YybS family protein -
  ACCB35_RS22240 rpsR 4451721..4451957 (-) 237 WP_034764780.1 30S ribosomal protein S18 -
  ACCB35_RS22245 ssbA 4451999..4452511 (-) 513 WP_044340263.1 single-stranded DNA-binding protein Machinery gene
  ACCB35_RS22250 rpsF 4452590..4452877 (-) 288 WP_034764776.1 30S ribosomal protein S6 -
  ACCB35_RS22255 ychF 4453227..4454327 (-) 1101 WP_044340264.1 redox-regulated ATPase YchF -
  ACCB35_RS22260 - 4454603..4454803 (-) 201 WP_044340265.1 DUF951 domain-containing protein -
  ACCB35_RS22265 - 4454817..4455761 (-) 945 WP_374055335.1 mechanosensitive ion channel family protein -
  ACCB35_RS22270 yyaC 4456020..4456640 (+) 621 WP_374055336.1 spore protease YyaC -
  ACCB35_RS22275 - 4456697..4457410 (-) 714 WP_374055337.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18848.59 Da        Isoelectric Point: 4.8013

>NTDB_id=1044799 ACCB35_RS22245 WP_044340263.1 4451999..4452511(-) (ssbA) [Rossellomorea sp. FM04394]
MMNRVVLVGRLTKDPELKYTPSGVAVASFTLAVNRSFTNQSGEREADFINCVVWRRPAENVANFLKKGSLAGVDGRIQTR
NFEGQDGRRVFMTEVVAESVQFLEPRSANQGDRGGSPGYSGGGQRDQGNPYSQNQNQQRNNNNNNYTRVDEDPFANDGQP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=1044799 ACCB35_RS22245 WP_044340263.1 4451999..4452511(-) (ssbA) [Rossellomorea sp. FM04394]
ATGATGAACCGAGTTGTATTAGTAGGGCGTTTAACCAAGGACCCTGAATTAAAATATACTCCAAGCGGAGTGGCTGTTGC
TTCGTTTACACTGGCTGTCAATCGTAGTTTTACGAATCAATCAGGAGAACGGGAAGCAGATTTTATTAACTGTGTTGTAT
GGCGTCGCCCTGCAGAGAATGTAGCAAACTTTCTTAAAAAAGGCAGCTTAGCTGGCGTTGACGGTCGCATTCAAACACGT
AATTTCGAAGGACAGGATGGACGTAGGGTGTTTATGACGGAAGTTGTAGCAGAAAGCGTTCAGTTCTTAGAGCCACGTAG
TGCGAACCAAGGTGATCGTGGAGGAAGTCCGGGCTATTCGGGTGGAGGTCAACGTGACCAAGGAAATCCGTATAGTCAGA
ATCAGAATCAACAACGCAACAACAATAACAACAACTATACACGTGTAGATGAGGATCCATTTGCAAATGACGGTCAGCCG
ATCGACATTTCCGATGATGATCTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

69.143

100

0.712
  ssb Latilactobacillus sakei subsp. sakei 23K

54.706

100

0.547
  ssb Glaesserella parasuis strain SC1401

36.667

100

0.388
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

62.353

0.376

Multiple sequence alignment