Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | ACEPWM_RS10555 | Genome accession | NZ_CP168642 |
| Coordinates | 2178298..2178768 (-) | Length | 156 a.a. |
| NCBI ID | WP_000934759.1 | Uniprot ID | A0A2I7Y8V1 |
| Organism | Staphylococcus aureus strain NCCP11854 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2146435..2188863 | 2178298..2178768 | within | 0 |
Gene organization within MGE regions
Location: 2146435..2188863
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACEPWM_RS10345 (ACEPWM_10345) | - | 2146435..2147271 (-) | 837 | WP_000675478.1 | hypothetical protein | - |
| ACEPWM_RS10350 (ACEPWM_10350) | - | 2147887..2149341 (-) | 1455 | WP_000909210.1 | N-acetylmuramoyl-L-alanine amidase | - |
| ACEPWM_RS10355 (ACEPWM_10355) | - | 2149352..2149654 (-) | 303 | WP_000339141.1 | phage holin | - |
| ACEPWM_RS10360 (ACEPWM_10360) | - | 2149790..2150089 (-) | 300 | WP_000466784.1 | DUF2951 domain-containing protein | - |
| ACEPWM_RS10365 (ACEPWM_10365) | - | 2150135..2150299 (-) | 165 | WP_000916020.1 | XkdX family protein | - |
| ACEPWM_RS10370 (ACEPWM_10370) | - | 2150292..2150681 (-) | 390 | WP_001166599.1 | DUF2977 domain-containing protein | - |
| ACEPWM_RS10375 (ACEPWM_10375) | - | 2150681..2152147 (-) | 1467 | WP_031900278.1 | BppU family phage baseplate upper protein | - |
| ACEPWM_RS10380 (ACEPWM_10380) | - | 2152147..2154057 (-) | 1911 | WP_000429551.1 | minor structural protein | - |
| ACEPWM_RS10385 (ACEPWM_10385) | - | 2154073..2154363 (-) | 291 | WP_000179860.1 | hypothetical protein | - |
| ACEPWM_RS10390 (ACEPWM_10390) | - | 2154363..2155946 (-) | 1584 | WP_000384462.1 | prophage endopeptidase tail family protein | - |
| ACEPWM_RS10395 (ACEPWM_10395) | - | 2155955..2156779 (-) | 825 | WP_001190533.1 | phage tail family protein | - |
| ACEPWM_RS10400 (ACEPWM_10400) | - | 2156779..2162979 (-) | 6201 | WP_031900279.1 | phage tail tape measure protein | - |
| ACEPWM_RS10405 (ACEPWM_10405) | - | 2162993..2163151 (-) | 159 | WP_000438833.1 | hypothetical protein | - |
| ACEPWM_RS10410 (ACEPWM_10410) | gpG | 2163202..2163543 (-) | 342 | WP_000589166.1 | phage tail assembly chaperone G | - |
| ACEPWM_RS10415 (ACEPWM_10415) | - | 2163601..2164056 (-) | 456 | WP_000169128.1 | Ig-like domain-containing protein | - |
| ACEPWM_RS10420 (ACEPWM_10420) | - | 2164148..2164789 (-) | 642 | WP_000807536.1 | major tail protein | - |
| ACEPWM_RS10425 (ACEPWM_10425) | - | 2164824..2165219 (-) | 396 | WP_001023806.1 | DUF3168 domain-containing protein | - |
| ACEPWM_RS10430 (ACEPWM_10430) | - | 2165220..2165621 (-) | 402 | WP_000110023.1 | hypothetical protein | - |
| ACEPWM_RS10435 (ACEPWM_10435) | - | 2165618..2165950 (-) | 333 | WP_031838176.1 | phage protein | - |
| ACEPWM_RS10440 (ACEPWM_10440) | - | 2165962..2166240 (-) | 279 | WP_000050973.1 | head-tail connector protein | - |
| ACEPWM_RS10445 (ACEPWM_10445) | - | 2166309..2167472 (-) | 1164 | WP_001142739.1 | phage major capsid protein | - |
| ACEPWM_RS10450 (ACEPWM_10450) | - | 2167484..2168257 (-) | 774 | WP_000061872.1 | head maturation protease, ClpP-related | - |
| ACEPWM_RS10455 (ACEPWM_10455) | - | 2168241..2169479 (-) | 1239 | WP_001100669.1 | phage portal protein | - |
| ACEPWM_RS10460 (ACEPWM_10460) | - | 2169484..2171175 (-) | 1692 | WP_000153549.1 | terminase large subunit | - |
| ACEPWM_RS10465 (ACEPWM_10465) | - | 2171165..2171470 (-) | 306 | WP_000778930.1 | P27 family phage terminase small subunit | - |
| ACEPWM_RS10470 (ACEPWM_10470) | - | 2171597..2171911 (-) | 315 | WP_000196700.1 | HNH endonuclease | - |
| ACEPWM_RS10475 (ACEPWM_10475) | - | 2172073..2172510 (-) | 438 | WP_053507569.1 | transcriptional regulator | - |
| ACEPWM_RS10480 (ACEPWM_10480) | - | 2172523..2173434 (-) | 912 | Protein_2013 | SNF2-related protein | - |
| ACEPWM_RS10485 (ACEPWM_10485) | - | 2173434..2173760 (-) | 327 | Protein_2014 | hypothetical protein | - |
| ACEPWM_RS10490 (ACEPWM_10490) | - | 2173812..2174012 (-) | 201 | WP_000265258.1 | DUF1514 family protein | - |
| ACEPWM_RS10495 (ACEPWM_10495) | rinB | 2174080..2174232 (-) | 153 | WP_000237866.1 | transcriptional activator RinB | - |
| ACEPWM_RS10500 (ACEPWM_10500) | - | 2174235..2174435 (-) | 201 | WP_001125015.1 | hypothetical protein | - |
| ACEPWM_RS10505 (ACEPWM_10505) | - | 2174410..2174598 (-) | 189 | WP_000195823.1 | DUF1381 domain-containing protein | - |
| ACEPWM_RS10510 (ACEPWM_10510) | - | 2174615..2174788 (-) | 174 | WP_001209219.1 | hypothetical protein | - |
| ACEPWM_RS10515 (ACEPWM_10515) | - | 2174825..2175355 (-) | 531 | WP_235103126.1 | dUTPase | - |
| ACEPWM_RS10520 (ACEPWM_10520) | - | 2175711..2175836 (-) | 126 | Protein_2021 | DUF1024 family protein | - |
| ACEPWM_RS10525 (ACEPWM_10525) | - | 2175851..2176093 (-) | 243 | WP_000221877.1 | SAV1978 family virulence-associated passenger protein | - |
| ACEPWM_RS10530 (ACEPWM_10530) | - | 2176096..2176353 (-) | 258 | WP_000111491.1 | DUF3310 domain-containing protein | - |
| ACEPWM_RS10535 (ACEPWM_10535) | - | 2176353..2176724 (-) | 372 | WP_000101279.1 | SA1788 family PVL leukocidin-associated protein | - |
| ACEPWM_RS10540 (ACEPWM_10540) | - | 2176737..2177141 (-) | 405 | Protein_2025 | RusA family crossover junction endodeoxyribonuclease | - |
| ACEPWM_RS10545 (ACEPWM_10545) | - | 2177150..2177368 (-) | 219 | WP_000338528.1 | hypothetical protein | - |
| ACEPWM_RS10550 (ACEPWM_10550) | - | 2177375..2178268 (-) | 894 | WP_000148333.1 | DnaD domain-containing protein | - |
| ACEPWM_RS10555 (ACEPWM_10555) | ssbA | 2178298..2178768 (-) | 471 | WP_000934759.1 | single-stranded DNA-binding protein | Machinery gene |
| ACEPWM_RS10560 (ACEPWM_10560) | - | 2178769..2179386 (-) | 618 | WP_064135358.1 | MBL fold metallo-hydrolase | - |
| ACEPWM_RS10565 (ACEPWM_10565) | - | 2179467..2180387 (-) | 921 | WP_000180600.1 | recombinase RecT | - |
| ACEPWM_RS10570 (ACEPWM_10570) | - | 2180389..2182332 (-) | 1944 | WP_000700554.1 | AAA family ATPase | - |
| ACEPWM_RS10575 (ACEPWM_10575) | - | 2182341..2182604 (-) | 264 | WP_001205732.1 | hypothetical protein | - |
| ACEPWM_RS10580 (ACEPWM_10580) | - | 2182613..2182873 (-) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| ACEPWM_RS10585 (ACEPWM_10585) | - | 2182878..2183180 (-) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| ACEPWM_RS10590 (ACEPWM_10590) | - | 2183275..2183436 (-) | 162 | WP_031833131.1 | DUF1270 domain-containing protein | - |
| ACEPWM_RS10595 (ACEPWM_10595) | - | 2183448..2183711 (-) | 264 | WP_001124198.1 | helix-turn-helix domain-containing protein | - |
| ACEPWM_RS10600 (ACEPWM_10600) | - | 2183738..2183953 (-) | 216 | WP_001097552.1 | hypothetical protein | - |
| ACEPWM_RS10605 (ACEPWM_10605) | - | 2184008..2184373 (+) | 366 | WP_001128433.1 | hypothetical protein | - |
| ACEPWM_RS10610 (ACEPWM_10610) | - | 2184342..2184587 (-) | 246 | WP_001025401.1 | DUF2829 domain-containing protein | - |
| ACEPWM_RS10615 (ACEPWM_10615) | - | 2184616..2185392 (-) | 777 | WP_001148544.1 | Rha family transcriptional regulator | - |
| ACEPWM_RS10620 (ACEPWM_10620) | - | 2185408..2185626 (-) | 219 | WP_001198673.1 | helix-turn-helix transcriptional regulator | - |
| ACEPWM_RS10625 (ACEPWM_10625) | - | 2185768..2186487 (+) | 720 | WP_000358224.1 | XRE family transcriptional regulator | - |
| ACEPWM_RS10630 (ACEPWM_10630) | - | 2186557..2186739 (+) | 183 | WP_000705240.1 | hypothetical protein | - |
| ACEPWM_RS10635 (ACEPWM_10635) | - | 2186775..2186921 (+) | 147 | WP_001013104.1 | hypothetical protein | - |
| ACEPWM_RS10640 (ACEPWM_10640) | - | 2186918..2187532 (-) | 615 | WP_000191458.1 | hypothetical protein | - |
| ACEPWM_RS10645 (ACEPWM_10645) | - | 2187658..2188863 (+) | 1206 | WP_000264751.1 | site-specific integrase | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=1044663 ACEPWM_RS10555 WP_000934759.1 2178298..2178768(-) (ssbA) [Staphylococcus aureus strain NCCP11854]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=1044663 ACEPWM_RS10555 WP_000934759.1 2178298..2178768(-) (ssbA) [Staphylococcus aureus strain NCCP11854]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |