Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACEN9H_RS02015 Genome accession   NZ_CP168562
Coordinates   437642..439075 (+) Length   477 a.a.
NCBI ID   WP_413673601.1    Uniprot ID   -
Organism   Massilia cellulosiltytica strain CT11-92     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 432642..444075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEN9H_RS01990 (ACEN9H_01990) - 433040..433873 (+) 834 WP_056124244.1 ABC transporter permease -
  ACEN9H_RS01995 (ACEN9H_01995) - 433876..434670 (+) 795 WP_413673598.1 ABC transporter ATP-binding protein -
  ACEN9H_RS02000 (ACEN9H_02000) - 434837..435640 (+) 804 WP_413673599.1 inner membrane protein YpjD -
  ACEN9H_RS02005 (ACEN9H_02005) - 435637..435924 (+) 288 WP_371767105.1 PP0621 family protein -
  ACEN9H_RS02010 (ACEN9H_02010) - 435933..437624 (+) 1692 WP_413673600.1 two-component system sensor histidine kinase NtrB -
  ACEN9H_RS02015 (ACEN9H_02015) pilR 437642..439075 (+) 1434 WP_413673601.1 sigma-54-dependent transcriptional regulator Regulator
  ACEN9H_RS02020 (ACEN9H_02020) - 439526..442438 (+) 2913 WP_413673602.1 ribonucleoside-diphosphate reductase subunit alpha -
  ACEN9H_RS02025 (ACEN9H_02025) - 442532..443644 (+) 1113 WP_413673603.1 ribonucleotide-diphosphate reductase subunit beta -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 50905.60 Da        Isoelectric Point: 5.5466

>NTDB_id=1044553 ACEN9H_RS02015 WP_413673601.1 437642..439075(+) (pilR) [Massilia cellulosiltytica strain CT11-92]
MSSPRILVVDDEPDLRELLEITLLKMGLDVDSAATVREARALLGQKPYALVLTDMRLPDGLGLELVREVAAHHKSTPIAV
ITAYGSAENAVVALKAGAFDYVSKPVVLDDLRAMVRAALKLSDPAAAPAASQAGDTSRLIGQSPAMQALRAQIARLARSQ
APIAINGESGSGKELAARAIHAQSARAGKPFVAVNCGAIPEALMEAEFFGYRKGAFTGANDERDGFFQAANGGTLMLDEV
ADLPLAMQVKLLRAIQERRVRKIGATVEEPVDVRIISATHKDLSRCVENGSFRQDLFYRLNVIELTLPPLRERLDDLPLL
VDAILARLAGPGGARLGPGVLDALRGYAFPGNVRELENVLERALAFADDGVIEVGDLLLKGAKLGDAAVVPQPPQTPVSA
APAPPAALDQAAPPPPLAHDALPSNLPDYLSQVERDIILRALNQTQFNRTQAASLLGISVRQLRYQMQKLDIHAPEP

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=1044553 ACEN9H_RS02015 WP_413673601.1 437642..439075(+) (pilR) [Massilia cellulosiltytica strain CT11-92]
ATGAGCTCACCCCGCATCCTGGTGGTCGACGACGAACCCGACCTGCGCGAGCTGCTCGAGATCACCCTGCTCAAGATGGG
GCTCGACGTCGACAGCGCCGCGACCGTCCGCGAGGCGCGTGCGCTGCTGGGGCAGAAGCCCTATGCGCTGGTGCTGACCG
ACATGCGCCTGCCCGACGGCCTCGGGCTGGAACTGGTGCGCGAGGTCGCTGCCCATCATAAGAGCACGCCCATCGCCGTG
ATCACCGCGTATGGCAGCGCCGAGAATGCCGTCGTCGCGCTGAAAGCCGGGGCGTTCGACTACGTGTCGAAGCCCGTCGT
GCTGGACGATTTGCGCGCCATGGTGCGCGCGGCCTTGAAACTGTCCGACCCCGCGGCGGCGCCAGCCGCCAGCCAGGCCG
GAGACACGTCGCGCCTGATCGGGCAATCGCCCGCGATGCAGGCGCTGCGCGCGCAGATCGCGCGACTGGCGCGGTCGCAG
GCGCCGATCGCGATCAACGGCGAATCCGGCAGCGGCAAGGAACTGGCCGCGCGCGCGATCCACGCCCAGAGCGCGCGCGC
CGGCAAGCCGTTCGTCGCCGTGAACTGCGGCGCGATCCCCGAGGCGCTGATGGAGGCCGAGTTCTTCGGCTATCGCAAGG
GCGCGTTCACGGGTGCGAACGACGAGCGCGACGGCTTCTTCCAGGCGGCCAACGGCGGCACGCTGATGCTCGACGAGGTG
GCGGACCTGCCGCTCGCGATGCAGGTCAAACTGCTGCGCGCGATCCAGGAGCGGCGCGTGCGCAAGATCGGCGCGACGGT
CGAGGAACCGGTCGACGTGCGCATCATCAGCGCCACGCACAAGGATCTCTCCAGATGCGTGGAAAACGGCAGCTTCCGCC
AGGACCTGTTCTACCGCCTGAACGTCATCGAGCTCACGTTGCCGCCGCTGCGCGAACGGCTGGACGATTTGCCGCTGCTG
GTGGACGCCATCCTCGCGCGCCTAGCTGGGCCGGGCGGGGCGCGACTGGGGCCCGGCGTGCTGGACGCGCTGCGCGGCTA
CGCGTTCCCGGGCAATGTGCGCGAGCTGGAAAACGTGCTGGAACGCGCGCTCGCGTTTGCCGACGACGGCGTGATCGAAG
TGGGCGACCTGCTGCTGAAAGGGGCGAAGCTGGGCGATGCAGCCGTCGTGCCGCAGCCGCCGCAGACGCCGGTGAGCGCG
GCACCGGCGCCGCCAGCGGCGCTGGATCAGGCCGCGCCGCCGCCGCCGCTCGCGCACGACGCGCTGCCGAGCAACCTGCC
GGACTACCTGAGCCAGGTCGAGCGCGACATCATCCTGCGCGCGCTGAACCAGACCCAGTTCAACCGCACGCAGGCGGCGA
GCCTGCTCGGCATCAGTGTCCGGCAGCTGCGCTACCAGATGCAGAAACTGGATATCCACGCGCCCGAGCCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-115)

Sigma-54 interaction domain (Sigma54_activat)

(139-305)

Bacterial regulatory protein, Fis family (HTH_8)

(430-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

55.158

99.581

0.549
  pilR Acinetobacter baumannii strain A118

44.586

98.742

0.44
  luxO Vibrio cholerae strain A1552

37.179

98.113

0.365

Multiple sequence alignment