Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   ACEN8S_RS15520 Genome accession   NZ_CP168517
Coordinates   3510031..3511089 (-) Length   352 a.a.
NCBI ID   WP_413624439.1    Uniprot ID   -
Organism   Luteibacter sp. Lutesp34 strain CT11-34     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3505031..3516089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEN8S_RS15500 (ACEN8S_15500) pilQ 3505818..3508094 (-) 2277 WP_413624435.1 type IV pilus secretin PilQ -
  ACEN8S_RS15505 (ACEN8S_15505) - 3508114..3508641 (-) 528 WP_413624436.1 pilus assembly protein PilP -
  ACEN8S_RS15510 (ACEN8S_15510) - 3508641..3509297 (-) 657 WP_413624437.1 type 4a pilus biogenesis protein PilO -
  ACEN8S_RS15515 (ACEN8S_15515) - 3509294..3510031 (-) 738 WP_413624438.1 PilN domain-containing protein -
  ACEN8S_RS15520 (ACEN8S_15520) pilM 3510031..3511089 (-) 1059 WP_413624439.1 pilus assembly protein PilM Machinery gene
  ACEN8S_RS15525 (ACEN8S_15525) - 3511326..3513884 (+) 2559 WP_413624440.1 penicillin-binding protein 1A -
  ACEN8S_RS15530 (ACEN8S_15530) - 3513942..3514598 (+) 657 WP_413624441.1 hypothetical protein -
  ACEN8S_RS15535 (ACEN8S_15535) - 3514778..3515251 (+) 474 WP_413624442.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37825.31 Da        Isoelectric Point: 4.5245

>NTDB_id=1044447 ACEN8S_RS15520 WP_413624439.1 3510031..3511089(-) (pilM) [Luteibacter sp. Lutesp34 strain CT11-34]
MGLFTPKAAPLIGVDISSTAVKLLQLSQAGGRYRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRALARSGSKSRHAAAA
VAGSAVITRVIPMSADLSEDDLEGQIQVEANQYIPYPIEEVSLDFEVLGPVRDNPEMNNVLLAASRTENVDMRIAALDLG
GLTARVIDVEAFAMENAFSMVADQLAVSRDALVAVVDIGATMTTLAVLKNQRTIYSREQVFGGKQLTDEIMRRYGLSYEE
AGRAKRKGGLPESYEAEALEPFKESLVQQVSRLLQFFFAGSEYSRVDQVVLAGGCAAIDGITELLEQQLGVPCVVANPLA
RMSLSSKVQAQTLAQDAPALMIAVGLAMRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1044447 ACEN8S_RS15520 WP_413624439.1 3510031..3511089(-) (pilM) [Luteibacter sp. Lutesp34 strain CT11-34]
GTGGGGCTCTTTACACCGAAGGCGGCGCCGTTGATCGGCGTCGATATCAGTTCGACTGCGGTAAAGCTGCTTCAACTCAG
CCAGGCCGGCGGGCGCTATCGCGTGGAGCACTACGCGGTCGAGCCCCTGCCGCCGAACGCGGTGGTGGAAAAGAACATCG
TCGAGGTCGAGGCGGTGGGCGAGGCCATTCGCCGCGCCCTGGCCCGCTCCGGCTCCAAGAGCCGGCACGCCGCGGCCGCG
GTGGCCGGGTCCGCCGTGATCACCCGCGTCATCCCCATGTCGGCCGACCTTTCCGAGGACGATCTCGAAGGGCAGATCCA
GGTCGAGGCCAACCAGTACATTCCCTACCCGATCGAGGAAGTGAGCCTCGATTTCGAGGTGCTGGGGCCCGTTCGCGACA
ATCCCGAGATGAACAACGTGCTCCTGGCCGCGTCGCGCACGGAGAACGTGGACATGCGCATCGCGGCGCTGGACCTGGGG
GGGCTGACCGCCCGGGTCATCGACGTCGAGGCATTCGCCATGGAGAACGCCTTCAGCATGGTGGCCGACCAGCTGGCGGT
GTCCCGCGACGCCCTGGTGGCCGTCGTGGACATCGGGGCCACCATGACCACCCTGGCGGTGCTGAAGAATCAGCGCACCA
TCTATTCCCGCGAGCAGGTCTTCGGCGGCAAGCAGCTCACCGACGAGATCATGCGGCGCTACGGCCTCTCCTACGAGGAA
GCCGGCCGCGCCAAGCGCAAGGGCGGCCTGCCGGAGTCCTACGAAGCCGAAGCCCTCGAACCGTTCAAGGAGTCGCTGGT
GCAGCAGGTGAGCCGCCTGCTCCAGTTCTTCTTCGCCGGCAGCGAGTACAGCCGCGTCGACCAGGTGGTGCTGGCCGGCG
GCTGCGCCGCCATCGACGGCATCACGGAACTTCTCGAACAGCAACTGGGCGTGCCTTGCGTGGTTGCCAATCCGCTGGCC
CGCATGTCGCTGTCCAGCAAGGTGCAGGCCCAGACCCTCGCCCAGGACGCCCCCGCCCTGATGATCGCCGTCGGCCTGGC
CATGAGGAGCTTCGACTGA

Domains

Predicted by InterProScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

53.509

97.159

0.52
  comM Acinetobacter nosocomialis M2

53.216

97.159

0.517
  comM Acinetobacter baylyi ADP1

51.873

98.58

0.511
  pilM Legionella pneumophila strain ERS1305867

42.493

100

0.426

Multiple sequence alignment