Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACEP9W_RS05210 Genome accession   NZ_CP168397
Coordinates   1056886..1057395 (+) Length   169 a.a.
NCBI ID   WP_026614045.1    Uniprot ID   -
Organism   Ensifer aridi strain RCAM05007     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1051886..1062395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEP9W_RS05200 (ACEP9W_05200) - 1052791..1053597 (-) 807 WP_026614043.1 DUF72 domain-containing protein -
  ACEP9W_RS05205 (ACEP9W_05205) uvrA 1053677..1056598 (-) 2922 WP_373413879.1 excinuclease ABC subunit UvrA -
  ACEP9W_RS05210 (ACEP9W_05210) ssb 1056886..1057395 (+) 510 WP_026614045.1 single-stranded DNA-binding protein Machinery gene
  ACEP9W_RS05215 (ACEP9W_05215) - 1057565..1058194 (-) 630 WP_046120707.1 MarC family protein -
  ACEP9W_RS05220 (ACEP9W_05220) gyrA 1058492..1061275 (+) 2784 WP_026614047.1 DNA gyrase subunit A -
  ACEP9W_RS05225 (ACEP9W_05225) - 1061386..1062324 (-) 939 WP_373413880.1 transglycosylase SLT domain-containing protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18535.22 Da        Isoelectric Point: 5.3397

>NTDB_id=1043920 ACEP9W_RS05210 WP_026614045.1 1056886..1057395(+) (ssb) [Ensifer aridi strain RCAM05007]
MAGSVNKVILIGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERREKTEWHTVVVFNEGLCKVVEQYVKKGAKLYI
EGQLQTRKWQDQNGNDRYSTEVVLQGFNSTLTMLDGRGEGGGAGRGGSDYGGGYEDYDQPRQSSGGRSGGQSNQGGGNFS
RDLDDDIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=1043920 ACEP9W_RS05210 WP_026614045.1 1056886..1057395(+) (ssb) [Ensifer aridi strain RCAM05007]
ATGGCTGGTAGCGTCAACAAGGTGATCTTGATCGGAAATGTCGGGGCGGACCCCGAAATCCGGCGCACGCAGGATGGCCG
GCCGATCGCCAACCTCAGGATCGCCACATCGGAGACCTGGCGCGATCGGAATTCGGGCGAGCGTCGCGAGAAGACCGAGT
GGCACACCGTGGTCGTCTTCAACGAGGGGCTCTGCAAGGTCGTCGAGCAATATGTGAAGAAGGGCGCCAAGCTTTACATC
GAAGGCCAATTGCAGACGCGCAAATGGCAGGACCAGAACGGCAATGATCGCTACTCGACCGAAGTCGTTCTGCAAGGCTT
CAATTCGACGCTGACCATGCTCGACGGCCGCGGCGAAGGCGGCGGTGCCGGTCGCGGCGGCAGCGACTACGGCGGCGGCT
ATGAAGATTACGACCAGCCGCGGCAATCCTCAGGCGGACGCTCCGGCGGTCAATCCAACCAGGGCGGCGGCAATTTCTCG
CGCGACCTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

45.263

100

0.509
  ssb Vibrio cholerae strain A1552

49.425

100

0.509
  ssb Neisseria meningitidis MC58

37.989

100

0.402
  ssb Neisseria gonorrhoeae MS11

37.989

100

0.402

Multiple sequence alignment