Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   ACD269_RS10785 Genome accession   NZ_CP168260
Coordinates   2095372..2096034 (-) Length   220 a.a.
NCBI ID   WP_000649971.1    Uniprot ID   A0A0B7MFB3
Organism   Streptococcus pneumoniae strain FC2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2090372..2101034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACD269_RS10760 (ACD269_10760) - 2090524..2090790 (-) 267 WP_001278167.1 Veg family protein -
  ACD269_RS10765 (ACD269_10765) dnaB 2090792..2092144 (-) 1353 WP_000852486.1 replicative DNA helicase -
  ACD269_RS10770 (ACD269_10770) rplI 2092187..2092639 (-) 453 WP_000864220.1 50S ribosomal protein L9 -
  ACD269_RS10775 (ACD269_10775) - 2092636..2094609 (-) 1974 WP_000715127.1 DHH family phosphoesterase -
  ACD269_RS10780 (ACD269_10780) hpf 2094745..2095293 (-) 549 WP_000599106.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ACD269_RS10785 (ACD269_10785) comFC/cflB 2095372..2096034 (-) 663 WP_000649971.1 ComF family protein Machinery gene
  ACD269_RS10790 (ACD269_10790) comFA/cflA 2096031..2097329 (-) 1299 WP_000867608.1 DEAD/DEAH box helicase Machinery gene
  ACD269_RS10795 (ACD269_10795) - 2097385..2098020 (+) 636 WP_000395730.1 YigZ family protein -
  ACD269_RS10800 (ACD269_10800) cysK 2098305..2099225 (+) 921 WP_000029866.1 cysteine synthase A -
  ACD269_RS10805 (ACD269_10805) - 2099464..2099838 (-) 375 Protein_2090 IS66 family transposase -
  ACD269_RS10810 (ACD269_10810) - 2099811..2100119 (+) 309 Protein_2091 transposase -
  ACD269_RS10815 (ACD269_10815) tnpB 2100292..2100579 (-) 288 WP_000586646.1 IS66 family insertion sequence element accessory protein TnpB -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25241.10 Da        Isoelectric Point: 7.3688

>NTDB_id=1043541 ACD269_RS10785 WP_000649971.1 2095372..2096034(-) (comFC/cflB) [Streptococcus pneumoniae strain FC2]
MKCLLCGQTMKTVLTFSSLLLLRNDDSCLCSDCDSTFERIGEENCPNCMKTELSTKCQDCQLWCKEGVEVSHRAIFTYNQ
AMKDFFSRYKFDGDFLLRKVFASFLSEELKKYKEYQFVVIPLSPDRYANRGFNQVEGLVEAAGFEYLDLLEKREERASSS
KNRSERLGTELPFFIKSGVTIPKKILLIDDIYTTGATINRVKKLLEEAGAKDVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=1043541 ACD269_RS10785 WP_000649971.1 2095372..2096034(-) (comFC/cflB) [Streptococcus pneumoniae strain FC2]
ATGAAGTGCTTGTTATGTGGGCAGACTATGAAGACTGTTTTAACTTTTAGTAGTCTCTTACTTCTGAGGAATGATGACTC
TTGTCTTTGTTCAGACTGTGATTCTACTTTTGAAAGAATTGGGGAAGAGAACTGTCCAAATTGTATGAAAACAGAGTTGT
CAACAAAGTGTCAAGATTGTCAACTTTGGTGTAAAGAGGGAGTTGAAGTCAGTCATAGAGCGATTTTTACTTACAATCAA
GCTATGAAGGATTTTTTCAGTCGGTATAAGTTTGATGGAGACTTCCTGTTAAGAAAAGTTTTCGCTTCATTTTTAAGTGA
GGAGTTGAAAAAGTACAAAGAGTATCAATTTGTTGTAATTCCCCTAAGTCCTGATAGATATGCTAATAGAGGATTTAATC
AGGTTGAGGGCTTGGTAGAGGCAGCAGGCTTTGAGTATCTGGATTTATTAGAGAAAAGAGAAGAGAGAGCCAGTTCTTCT
AAAAATCGTTCAGAGCGCTTGGGGACAGAACTTCCTTTCTTTATTAAAAGTGGAGTCACTATTCCTAAAAAAATCCTACT
TATAGATGATATCTATACTACAGGAGCAACTATAAATCGTGTTAAGAAACTGTTGGAAGAAGCTGGTGCTAAGGATGTAA
AAACATTTTCCCTTGTAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(153-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B7MFB3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

100

100

1
  comFC/cflB Streptococcus pneumoniae Rx1

99.545

100

0.995
  comFC/cflB Streptococcus pneumoniae D39

99.545

100

0.995
  comFC/cflB Streptococcus pneumoniae R6

99.545

100

0.995
  comFC/cflB Streptococcus mitis NCTC 12261

91.818

100

0.918
  comFC/cflB Streptococcus mitis SK321

91.364

100

0.914

Multiple sequence alignment