Detailed information NTG1043452

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: P6F15_RS01060
• Genome accession: NZ_CP168247
• Coordinates: 202519..203418 (+)
• Length: 299 a.a.
• NCBI ID: WP_373332289.1
• Uniprot ID: -
• Organism: Thiopseudomonas alkaliphila strain 177
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 197519..208418

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P6F15_RS01035 (P6F15_01035)	-	197638..198054 (+)	417	WP_053103338.1	PACE efflux transporter	-
P6F15_RS01040 (P6F15_01040)	elbB	198097..198750 (+)	654	WP_373332287.1	isoprenoid biosynthesis glyoxalase ElbB	-
P6F15_RS01045 (P6F15_01045)	-	198821..199330 (-)	510	WP_053105043.1	pilin	-
P6F15_RS01050 (P6F15_01050)	pilB	199601..201292 (+)	1692	WP_373332288.1	type IV-A pilus assembly ATPase PilB	Machinery gene
P6F15_RS01055 (P6F15_01055)	pilC	201298..202515 (+)	1218	WP_053105045.1	type II secretion system F family protein	Machinery gene
P6F15_RS01060 (P6F15_01060)	pilD	202519..203418 (+)	900	WP_373332289.1	A24 family peptidase	Machinery gene
P6F15_RS01065 (P6F15_01065)	-	203626..203907 (-)	282	WP_053109901.1	GIY-YIG nuclease family protein	-
P6F15_RS01070 (P6F15_01070)	-	204172..205161 (-)	990	WP_373332290.1	hypothetical protein	-
P6F15_RS01075 (P6F15_01075)	-	205328..206539 (-)	1212	WP_053105049.1	NAD(P)/FAD-dependent oxidoreductase	-
P6F15_RS01080 (P6F15_01080)	-	206536..206994 (-)	459	WP_053103346.1	YiiD C-terminal domain-containing protein	-

Sequence

Protein

• Length: 299 a.a.
• Molecular weight: 32758.30 Da
• Isoelectric Point: 8.1041

>NTDB_id=1043452 P6F15_RS01060 WP_373332289.1 202519..203418(+) (pilD) [Thiopseudomonas alkaliphila strain 177]
MSDLLGLLQQELALFIALASLLGLLAGSFINVVVYRLPKMLQADWQQQAKVILAEAQPAVAARPEPDSTSPRFNLLVPRS
ACPRCQHVIKPWENIPLLSWLALKGKCSGCQQIISKRYPLVELASGILSAVVAWRFGFGLPAMAILLLTWGLLTMSLIDA
DHQLLPDILVLPLLWLGLLLNTQSMFVSLSDAVLGVAIGYLSLWSIYWLFKLIMGKEGMGYGDFKLLAMLGAWGGWQVLL
ITILLSSLVGAILGIIILRLQKEGIEKPIPYGPYLAVAGWIALLWGNQITQAYLEFAGL

Nucleotide

• Length: 900 bp

>NTDB_id=1043452 P6F15_RS01060 WP_373332289.1 202519..203418(+) (pilD) [Thiopseudomonas alkaliphila strain 177]
ATGAGTGATTTGCTTGGGTTACTACAGCAAGAGTTAGCTTTATTTATAGCTCTGGCTTCACTTTTAGGGTTATTAGCTGG
CAGCTTTATCAATGTGGTGGTATATCGCCTACCAAAAATGCTGCAGGCCGACTGGCAACAACAAGCTAAAGTAATTCTAG
CCGAAGCCCAGCCAGCGGTAGCTGCACGCCCAGAGCCTGATTCTACGAGTCCACGTTTTAACTTATTGGTACCACGCTCA
GCCTGCCCCCGTTGCCAGCATGTGATTAAGCCTTGGGAGAATATTCCGTTGCTTAGTTGGCTAGCGCTGAAAGGTAAGTG
CTCAGGCTGTCAGCAAATTATTAGTAAGCGCTATCCCTTGGTGGAGCTGGCCAGCGGCATTTTATCGGCAGTAGTGGCCT
GGAGATTTGGCTTTGGCCTACCAGCTATGGCTATATTGCTATTGACCTGGGGGCTACTGACGATGAGCCTGATTGACGCT
GATCATCAACTGCTTCCGGATATTTTAGTGTTGCCGTTACTTTGGCTGGGCTTGCTGCTAAATACCCAGTCTATGTTTGT
CAGCTTAAGTGATGCGGTATTGGGAGTAGCTATCGGTTATCTAAGTCTATGGAGTATTTATTGGCTATTTAAGCTAATTA
TGGGCAAAGAAGGCATGGGTTACGGTGACTTTAAGTTGCTGGCGATGCTGGGCGCTTGGGGTGGCTGGCAAGTCTTATTG
ATAACAATTTTACTGTCTTCGCTGGTGGGCGCAATTTTAGGCATTATTATTTTGCGCTTACAAAAAGAAGGCATAGAAAA
GCCTATTCCCTATGGCCCTTACCTCGCCGTCGCCGGATGGATCGCCTTACTATGGGGCAACCAAATCACCCAAGCTTATT
TGGAGTTTGCGGGGCTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-136)

• Type IV leader peptidase family (Peptidase_A24) (147-255)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.035	95.318	0.515
pilD	Acinetobacter baumannii D1279779	49.153	98.662	0.485
pilD	Acinetobacter nosocomialis M2	48.475	98.662	0.478
pilD	Vibrio campbellii strain DS40M4	50.709	94.314	0.478
pilD	Neisseria gonorrhoeae MS11	45.126	92.642	0.418