Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilY1   Type   Machinery gene
Locus tag   ACEN3H_RS01795 Genome accession   NZ_CP168231
Coordinates   376763..380617 (+) Length   1284 a.a.
NCBI ID   WP_373358448.1    Uniprot ID   -
Organism   Acinetobacter lactucae strain 2024CK-01095     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 371763..385617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEN3H_RS01765 (ACEN3H_01765) gmk 372044..372673 (-) 630 WP_002116973.1 guanylate kinase -
  ACEN3H_RS01770 (ACEN3H_01770) ispH 372796..373746 (+) 951 WP_373358443.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACEN3H_RS01775 (ACEN3H_01775) fimU 373917..374390 (+) 474 WP_373358444.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ACEN3H_RS01780 (ACEN3H_01780) pilV 374384..374944 (+) 561 WP_373358445.1 type IV pilus modification protein PilV Machinery gene
  ACEN3H_RS01785 (ACEN3H_01785) pilW 374944..375945 (+) 1002 WP_373358446.1 PilW family protein Machinery gene
  ACEN3H_RS01790 (ACEN3H_01790) pilX 375942..376751 (+) 810 WP_373358447.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ACEN3H_RS01795 (ACEN3H_01795) pilY1 376763..380617 (+) 3855 WP_373358448.1 PilC/PilY family type IV pilus protein Machinery gene
  ACEN3H_RS01800 (ACEN3H_01800) pilY2 380628..381110 (+) 483 WP_373358449.1 type IV pilin protein Machinery gene
  ACEN3H_RS01805 (ACEN3H_01805) pilE 381107..381532 (+) 426 WP_005078455.1 type IV pilin protein Machinery gene
  ACEN3H_RS01810 (ACEN3H_01810) rpsP 381680..381931 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  ACEN3H_RS01815 (ACEN3H_01815) rimM 381951..382499 (+) 549 WP_002116736.1 ribosome maturation factor RimM -
  ACEN3H_RS01820 (ACEN3H_01820) trmD 382542..383297 (+) 756 WP_057105812.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ACEN3H_RS01825 (ACEN3H_01825) rplS 383517..383885 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  ACEN3H_RS01830 (ACEN3H_01830) - 383937..384878 (-) 942 WP_080648732.1 triacylglycerol lipase -

Sequence


Protein


Download         Length: 1284 a.a.        Molecular weight: 138083.59 Da        Isoelectric Point: 7.7452

>NTDB_id=1043306 ACEN3H_RS01795 WP_373358448.1 376763..380617(+) (pilY1) [Acinetobacter lactucae strain 2024CK-01095]
MKLKLKNFKPNNLWYAICSSSVAFTWLMTSSVVQASDLQIYASPTAGKKTIVMMLDTSGSMTNNSYGENRLALLKNGMNA
FLASNNPVLNDTRVGLGNFSANGDSRSGQILVAAAPLGDASTLNTVGSQRYKLKQAVANLTAGGSTPSAHAYAEAAAYLM
GTTTYSEANYTIRKDSYVKRVRKSDNRTEYSYCTNYRDSQIDTTNLWQPCRSNNYWSNWSTSNPGVDTATAYDTSSDWTY
SYTYYYTTFNYAVANADSGIPKSKINDTTSNPNIVVDRNASNLNAIYQSPLPAVANRQSCDGQGIYFLSDGEPNNTTNTR
SATVMSTALGSTLGANFTCSGGLSNTTADSGWACMGEFAKRLFDKTKNPAGVSIQTAFVGFGSDFSSLSSSDVKNACRLS
SRTQSDRKSDDNCSPNQTTNAVAAPGYGNGGFFPTQSAQGVTDSVIAFINNLDKVPLEPLTTGAISVPYDALNPKNLQEY
GYLRAFEPNPANTYLTWRGNLKKYHVVLSGTNAGAFEANTGGLVYNATGAFRTGTKDYWNSSTYNDGGKVFFGGSYAKVP
LPIAGQNETRDEEGNITKYYYAVQTKIRNLFTDVSAVASDGSLTKISTSGTNLLRIPAAPPEGTNPFDSVANTASYVLGK
FNASTGQDILKAFPISLKLKILNYLGYSTDISATTLPSSLVTSNEPYLSMGGSIHSLPVQLTYNGTLDENGNLTSAREQS
ILYGTMEGGLHIVDASTGLEQMAFVPADILNDPVASKALVVGQSDATAPAHGMDGAWVSDPAYSITTTGSGSSAVSKVTA
KQMNIYGGMRMGGSSYYGLNVLNPASPKLLFRVGADQTDYSRMGQSWSKPVLANIRYNGVIKRVMIVGGGYDQCYENPNI
TLSNSCFTNGKAKGNAVYIIDAKTGERIWWTSDTGSSVDNSNMKHSIVSRISTLDRDADGLVDHLYFGDLGGQIFRIDLN
NNQTKTNSTYSSFGVRVVRLANLATNDSTYDSSNDYTAGNAPRFYEPPTVTIHDYGIRTFITVGIASGDRSTPLDVYPLT
GREGMSPSTALSGRPVNNVYGIIDKDFIKKNLMSLTDSQLETKDITRSMLRKNPQILRSGETRVAQIFFPNSGTGQNGWY
RSLSSMSDGTEKANNSFRIKGGLKAFEEPMAITGTLIVPVYDPQGTGIVAADPCLPRVVGETDQQTFCLPFGACLNSDGS
IDQNKENGSGFRTQTGTNCPVGASECNTNIIGSGIRGIAFVPKRDVPPVTNSCGKLQLSGNESGTGEWQCTSHLVPTRWY
ERYR

Nucleotide


Download         Length: 3855 bp        

>NTDB_id=1043306 ACEN3H_RS01795 WP_373358448.1 376763..380617(+) (pilY1) [Acinetobacter lactucae strain 2024CK-01095]
GTGAAACTAAAATTGAAGAATTTTAAGCCAAATAATTTATGGTATGCCATCTGTTCGAGTTCGGTTGCTTTTACATGGTT
GATGACAAGCTCTGTGGTGCAGGCAAGTGATTTACAAATTTATGCTTCACCTACAGCGGGTAAAAAAACCATTGTGATGA
TGTTGGATACATCAGGAAGTATGACCAACAATAGTTATGGTGAAAACCGTTTGGCCCTGCTTAAAAATGGTATGAATGCT
TTTTTAGCCAGCAATAATCCTGTTTTAAATGATACTCGTGTGGGCTTGGGAAATTTCTCTGCCAATGGTGATAGCCGAAG
TGGACAAATTTTGGTAGCTGCTGCTCCTTTAGGAGATGCGAGTACTTTAAATACAGTAGGTTCTCAGCGTTATAAATTAA
AACAGGCTGTTGCAAATTTAACTGCTGGTGGGTCAACACCTTCAGCGCATGCTTATGCAGAAGCTGCTGCTTATTTGATG
GGTACAACAACCTATTCAGAGGCGAATTATACTATTCGAAAAGATAGCTATGTAAAGCGTGTGCGAAAATCTGATAATAG
AACGGAATACTCATATTGTACGAATTATCGCGATTCACAAATCGATACTACAAATCTATGGCAACCTTGTCGTTCTAATA
ACTATTGGAGTAACTGGTCAACTTCTAATCCGGGTGTGGATACGGCAACTGCCTATGATACTTCTTCGGATTGGACTTAT
TCTTATACTTATTACTACACCACCTTTAATTATGCTGTAGCAAATGCAGATAGTGGCATTCCAAAATCAAAAATAAATGA
TACGACAAGCAATCCAAATATTGTTGTAGATAGAAATGCCTCTAATTTAAATGCTATTTACCAATCTCCTTTGCCTGCGG
TGGCCAATCGCCAGAGTTGTGATGGGCAAGGAATCTACTTTTTATCAGATGGGGAGCCGAACAATACAACAAATACGCGT
TCTGCAACTGTAATGTCGACAGCCCTAGGCAGCACTTTGGGAGCAAATTTTACTTGTTCTGGAGGTTTGTCTAACACGAC
AGCAGACTCTGGTTGGGCTTGTATGGGGGAATTTGCAAAAAGATTATTTGATAAAACAAAAAATCCAGCTGGAGTTTCTA
TTCAAACAGCATTTGTCGGTTTTGGTAGTGACTTTTCTAGTTTAAGTTCTTCTGATGTAAAAAATGCCTGTCGTTTAAGT
TCGAGAACCCAATCTGATCGTAAAAGTGATGATAATTGTTCGCCGAATCAGACCACAAATGCGGTCGCTGCACCTGGTTA
TGGAAATGGAGGATTTTTCCCTACCCAAAGTGCGCAAGGTGTAACAGATAGTGTTATCGCATTTATTAATAACTTAGATA
AAGTTCCTTTAGAACCCTTAACCACAGGTGCTATCTCTGTTCCTTATGATGCACTAAATCCTAAAAATTTACAGGAATAT
GGTTACTTACGTGCTTTTGAGCCAAACCCGGCTAACACCTACTTAACATGGCGAGGAAATTTAAAGAAATATCATGTTGT
TTTATCGGGAACAAATGCGGGCGCTTTTGAAGCTAATACAGGTGGGTTGGTTTACAACGCAACTGGGGCATTTAGAACGG
GTACGAAAGATTATTGGAATAGCTCTACTTATAATGATGGAGGTAAAGTCTTTTTTGGTGGTTCATATGCAAAAGTTCCT
TTACCAATTGCTGGACAAAATGAAACACGTGATGAAGAAGGAAATATCACAAAATATTATTACGCAGTACAAACTAAAAT
CCGCAACTTATTTACTGATGTTTCCGCCGTTGCATCAGATGGTAGCTTAACGAAAATATCGACTTCTGGAACTAATTTGC
TAAGAATCCCTGCTGCTCCACCAGAAGGAACTAATCCTTTTGATAGTGTGGCTAATACAGCAAGTTATGTTTTAGGAAAA
TTTAATGCATCAACGGGACAAGATATTTTAAAAGCTTTCCCGATTAGCTTGAAATTAAAAATATTAAATTATCTAGGTTA
CTCAACTGATATTAGCGCTACGACTTTACCTTCGTCATTAGTTACATCGAATGAACCCTATTTATCGATGGGCGGTAGTA
TTCATTCTTTACCGGTACAGCTTACCTATAATGGAACATTAGATGAAAATGGGAATTTAACATCTGCGCGTGAACAATCC
ATTCTCTATGGAACGATGGAAGGTGGTCTGCATATTGTGGATGCCTCAACTGGTTTAGAACAAATGGCTTTCGTTCCCGC
TGATATATTAAATGATCCAGTTGCATCAAAAGCTTTAGTGGTTGGCCAAAGTGATGCTACAGCTCCTGCTCACGGTATGG
ATGGGGCTTGGGTATCTGACCCTGCATATAGTATTACTACAACAGGAAGCGGTAGTTCAGCAGTATCAAAAGTAACTGCA
AAACAAATGAATATTTATGGTGGCATGCGAATGGGGGGCAGCAGCTATTATGGCTTAAATGTCTTAAATCCTGCTTCACC
TAAGCTTCTCTTTAGAGTAGGAGCAGATCAAACTGATTATAGTCGCATGGGGCAGAGTTGGTCTAAACCTGTACTTGCAA
ATATACGTTATAACGGGGTGATTAAACGGGTTATGATTGTGGGTGGTGGCTACGATCAATGTTATGAAAACCCGAATATT
ACCTTGAGTAACTCTTGCTTTACGAATGGAAAAGCAAAAGGGAATGCTGTTTATATTATTGATGCTAAAACTGGGGAACG
CATATGGTGGACTAGTGATACAGGCTCTAGTGTAGATAACTCTAATATGAAGCACAGTATTGTGAGTCGCATTAGTACCT
TAGATCGAGATGCTGATGGTTTGGTAGACCATTTATATTTTGGCGATTTAGGCGGACAAATTTTCCGTATCGATCTTAAT
AATAACCAGACAAAAACAAATTCAACCTATAGCAGTTTCGGTGTTCGAGTTGTTCGATTAGCCAATTTGGCAACGAATGA
TTCTACTTATGATAGCTCGAACGACTATACCGCTGGGAATGCGCCGCGTTTTTATGAACCGCCAACAGTGACAATTCACG
ATTATGGAATCCGCACTTTTATTACTGTAGGTATTGCTTCAGGTGACCGTAGTACTCCTTTAGATGTTTATCCGCTTACA
GGTCGTGAGGGGATGTCACCGAGCACGGCATTAAGCGGAAGACCTGTAAACAACGTCTATGGAATTATCGATAAAGACTT
TATTAAAAAGAACTTAATGTCTTTAACGGATAGCCAGCTTGAAACGAAAGATATTACTCGATCGATGCTTCGAAAAAATC
CACAAATTTTACGATCTGGGGAAACACGAGTAGCACAGATTTTCTTTCCAAACTCTGGGACGGGACAAAATGGTTGGTAT
CGTTCACTTTCTAGTATGAGCGATGGTACCGAGAAAGCTAATAATAGTTTCCGTATTAAAGGAGGTCTCAAAGCTTTTGA
AGAGCCTATGGCAATTACAGGGACTTTAATTGTGCCTGTTTATGATCCACAGGGAACAGGTATTGTAGCGGCAGACCCAT
GTTTACCCCGGGTAGTAGGTGAAACTGACCAGCAGACGTTCTGTTTACCATTTGGCGCCTGCCTTAATTCTGATGGATCA
ATTGATCAGAATAAAGAGAATGGAAGTGGATTCAGAACACAAACTGGTACTAATTGCCCAGTAGGAGCTTCTGAATGTAA
TACGAATATCATTGGCTCAGGTATTCGTGGTATAGCATTCGTTCCAAAAAGAGATGTACCTCCAGTGACTAATAGTTGTG
GGAAATTACAACTGTCTGGAAATGAGAGCGGAACGGGCGAATGGCAGTGTACAAGTCATCTAGTTCCTACGCGCTGGTAT
GAGCGTTATCGCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY1 Acinetobacter baumannii D1279779

84.884

100

0.853


Multiple sequence alignment