Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   ACEN3H_RS01790 Genome accession   NZ_CP168231
Coordinates   375942..376751 (+) Length   269 a.a.
NCBI ID   WP_373358447.1    Uniprot ID   -
Organism   Acinetobacter lactucae strain 2024CK-01095     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 370942..381751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEN3H_RS01755 (ACEN3H_01755) - 371499..371654 (-) 156 WP_014207816.1 hypothetical protein -
  ACEN3H_RS01760 (ACEN3H_01760) rpoZ 371693..371971 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  ACEN3H_RS01765 (ACEN3H_01765) gmk 372044..372673 (-) 630 WP_002116973.1 guanylate kinase -
  ACEN3H_RS01770 (ACEN3H_01770) ispH 372796..373746 (+) 951 WP_373358443.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACEN3H_RS01775 (ACEN3H_01775) fimU 373917..374390 (+) 474 WP_373358444.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ACEN3H_RS01780 (ACEN3H_01780) pilV 374384..374944 (+) 561 WP_373358445.1 type IV pilus modification protein PilV Machinery gene
  ACEN3H_RS01785 (ACEN3H_01785) pilW 374944..375945 (+) 1002 WP_373358446.1 PilW family protein Machinery gene
  ACEN3H_RS01790 (ACEN3H_01790) pilX 375942..376751 (+) 810 WP_373358447.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ACEN3H_RS01795 (ACEN3H_01795) pilY1 376763..380617 (+) 3855 WP_373358448.1 PilC/PilY family type IV pilus protein Machinery gene
  ACEN3H_RS01800 (ACEN3H_01800) pilY2 380628..381110 (+) 483 WP_373358449.1 type IV pilin protein Machinery gene
  ACEN3H_RS01805 (ACEN3H_01805) pilE 381107..381532 (+) 426 WP_005078455.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 28545.38 Da        Isoelectric Point: 7.7238

>NTDB_id=1043305 ACEN3H_RS01790 WP_373358447.1 375942..376751(+) (pilX) [Acinetobacter lactucae strain 2024CK-01095]
MTHLIHKSRSKEKGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTTLTNITNVI
GAALKEHESNPGAEYNFCYKPVSTATNFAQTRGASLLRAGSANNAVVEDGGVAGFCNLTTDYGSNRQAVVTQVAVSIPTD
AASDIPGSNLPRGTNTSEGTQLPKSMLSTQRIRVITTAFLPAYASTSIETLQRDCLSTSSAKISDNFDTALTAKQTLAEC
LANHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 810 bp        

>NTDB_id=1043305 ACEN3H_RS01790 WP_373358447.1 375942..376751(+) (pilX) [Acinetobacter lactucae strain 2024CK-01095]
ATGACCCATTTAATTCATAAAAGTAGATCTAAGGAAAAAGGGGCAACCCTTATTGTTGTACTTATTATTTTATTGATTGT
TATTTCTGTAGGCGTTTTAGCAATAAGAGTGGCTATTGTTTCTTTAAAAGTTGCTACCAATAGCCAAGTTAGCCAATTAA
ATTTTCAGTCATCTGACACACCTTTAGAACTCATTGTGCAGATGAATCCTACTACCTTAACTAATATTACTAATGTGATT
GGGGCGGCGCTGAAAGAGCACGAAAGTAACCCCGGTGCGGAATACAACTTTTGTTATAAGCCTGTTTCTACAGCAACAAA
TTTTGCTCAGACCAGAGGCGCAAGTTTACTTCGAGCAGGAAGTGCTAATAATGCGGTTGTCGAAGATGGCGGAGTGGCTG
GTTTCTGCAATTTAACAACTGACTATGGAAGTAATCGTCAAGCAGTGGTTACTCAAGTTGCTGTAAGTATTCCAACAGAT
GCTGCTAGCGATATTCCAGGTTCAAATTTACCGCGAGGAACAAATACTTCGGAAGGTACACAACTTCCTAAAAGCATGCT
ATCTACGCAACGTATTCGAGTGATTACAACAGCTTTTTTACCAGCCTATGCATCTACCTCTATCGAAACTTTACAAAGAG
ATTGCTTAAGCACGAGTTCGGCAAAAATTAGCGACAATTTTGATACCGCTTTAACAGCTAAACAAACATTGGCTGAGTGT
TTAGCAAATCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAATTATACCAATAAGCTCACTCAAATTACGGCACC
GGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

90.074

100

0.911

Multiple sequence alignment