Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   ACEN3H_RS01785 Genome accession   NZ_CP168231
Coordinates   374944..375945 (+) Length   333 a.a.
NCBI ID   WP_373358446.1    Uniprot ID   -
Organism   Acinetobacter lactucae strain 2024CK-01095     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 369944..380945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEN3H_RS01755 (ACEN3H_01755) - 371499..371654 (-) 156 WP_014207816.1 hypothetical protein -
  ACEN3H_RS01760 (ACEN3H_01760) rpoZ 371693..371971 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  ACEN3H_RS01765 (ACEN3H_01765) gmk 372044..372673 (-) 630 WP_002116973.1 guanylate kinase -
  ACEN3H_RS01770 (ACEN3H_01770) ispH 372796..373746 (+) 951 WP_373358443.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACEN3H_RS01775 (ACEN3H_01775) fimU 373917..374390 (+) 474 WP_373358444.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ACEN3H_RS01780 (ACEN3H_01780) pilV 374384..374944 (+) 561 WP_373358445.1 type IV pilus modification protein PilV Machinery gene
  ACEN3H_RS01785 (ACEN3H_01785) pilW 374944..375945 (+) 1002 WP_373358446.1 PilW family protein Machinery gene
  ACEN3H_RS01790 (ACEN3H_01790) pilX 375942..376751 (+) 810 WP_373358447.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ACEN3H_RS01795 (ACEN3H_01795) pilY1 376763..380617 (+) 3855 WP_373358448.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35772.46 Da        Isoelectric Point: 6.9683

>NTDB_id=1043304 ACEN3H_RS01785 WP_373358446.1 374944..375945(+) (pilW) [Acinetobacter lactucae strain 2024CK-01095]
MAHSFVSWKQRGFTLIELMVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYIARDIRLLNYGNVTNPIL
TDTTPWGGVVLTGSTATNNNTVNFVPNVGANTYIANTLLSRGAGDTVSTVSNHWKGLSNIQNSSNAAVQSDQLTIQFISP
TNMTNCEGVNVLAGDLIVERYFLRLDSNGSSQQDYALACDANTPSIVATAQPTTIAGLGDAGQIVLPRIDHFHVLFGAKN
AAGNFAYYTIPQYRAAAQAARDATPSVMPPRILSIQISVLARSTNNAQSKAIDPEQSFFMLDQTVHASDNTTRFLRRTYN
LTIALRNAMGESL

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=1043304 ACEN3H_RS01785 WP_373358446.1 374944..375945(+) (pilW) [Acinetobacter lactucae strain 2024CK-01095]
ATGGCTCACTCATTTGTATCGTGGAAACAACGGGGCTTTACATTAATTGAGCTGATGGTTGCATTGGCTTTAGGTCTAAT
TTTAGTAGCCGCGGCGACTCAATTATTTATTGGTGGACTTCTATCAAGCCGTCTACAAAAAGCAAATGCTGAAATACAAG
ATAGCGGTATTTTTGGTTTGGAATATATTGCCCGTGATATACGCCTTCTAAATTATGGAAATGTAACCAACCCAATCTTA
ACTGATACAACCCCTTGGGGCGGCGTTGTGCTAACTGGTTCAACAGCAACTAATAATAACACTGTTAATTTTGTCCCTAA
TGTCGGAGCAAATACTTATATTGCTAACACATTACTCAGTCGTGGCGCAGGAGATACGGTAAGTACAGTGAGCAATCACT
GGAAAGGTCTTTCAAATATACAGAACAGTTCAAATGCAGCTGTGCAAAGTGATCAATTGACGATTCAATTTATTTCTCCT
ACGAATATGACCAATTGTGAAGGTGTGAATGTACTTGCAGGAGATTTAATTGTAGAGCGTTATTTTTTACGTCTTGATAG
CAATGGTAGTTCACAGCAAGATTATGCACTCGCATGTGATGCAAATACTCCCTCTATTGTAGCCACAGCTCAACCGACAA
CTATTGCTGGGTTAGGCGACGCTGGTCAAATTGTATTGCCGCGTATTGATCATTTTCATGTGCTGTTTGGTGCAAAAAAT
GCGGCTGGCAATTTTGCTTACTATACCATTCCCCAATACCGCGCTGCTGCACAGGCTGCCCGAGATGCCACACCATCTGT
GATGCCGCCACGAATTCTTTCAATACAAATATCTGTATTAGCGCGCTCTACTAATAATGCCCAAAGCAAAGCAATAGATC
CTGAGCAATCTTTTTTTATGTTAGATCAAACCGTGCATGCTTCTGATAATACAACTCGATTCTTACGCCGCACTTATAAC
CTAACAATTGCTCTACGCAACGCGATGGGGGAAAGTCTATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

84.685

100

0.847

Multiple sequence alignment