Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACEL84_RS01805 Genome accession   NZ_CP168212
Coordinates   390802..391341 (+) Length   179 a.a.
NCBI ID   WP_261894647.1    Uniprot ID   -
Organism   Vibrio porteresiae strain MSSRF31     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 385802..396341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEL84_RS01790 (ACEL84_01790) uvrA 385912..388734 (-) 2823 WP_261894641.1 excinuclease ABC subunit UvrA -
  ACEL84_RS01795 (ACEL84_01795) galU 388872..389741 (-) 870 WP_261894643.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  ACEL84_RS01800 (ACEL84_01800) - 389858..390505 (-) 648 WP_261894645.1 helix-turn-helix transcriptional regulator -
  ACEL84_RS01805 (ACEL84_01805) ssb 390802..391341 (+) 540 WP_261894647.1 single-stranded DNA-binding protein Machinery gene
  ACEL84_RS01810 (ACEL84_01810) - 391409..392164 (-) 756 WP_261894649.1 replication initiation protein -
  ACEL84_RS01815 (ACEL84_01815) - 392391..392870 (-) 480 WP_261894650.1 YbaK/EbsC family protein -
  ACEL84_RS01820 (ACEL84_01820) - 393407..394615 (+) 1209 WP_261894652.1 DUF2075 domain-containing protein -
  ACEL84_RS01825 (ACEL84_01825) def 394627..395136 (+) 510 WP_261894653.1 peptide deformylase -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19832.94 Da        Isoelectric Point: 5.2156

>NTDB_id=1043093 ACEL84_RS01805 WP_261894647.1 390802..391341(+) (ssb) [Vibrio porteresiae strain MSSRF31]
MASRGVNKVILIGNLGNDPEVRYMPNGGAVANITIATSETWRDKATGEQRERTEWHRVALYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGYNGIMQMLGGRQGGGAPAGGMQQQQPQQQGGWGQPQQPAMQHQPQYQSAPAQQS
QPAPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=1043093 ACEL84_RS01805 WP_261894647.1 390802..391341(+) (ssb) [Vibrio porteresiae strain MSSRF31]
ATGGCAAGCCGTGGTGTGAACAAAGTAATTTTAATTGGCAACCTGGGTAATGATCCTGAGGTTCGTTACATGCCAAATGG
TGGTGCAGTTGCAAACATCACTATAGCAACGTCAGAAACTTGGCGTGATAAAGCAACGGGTGAACAACGTGAGAGAACTG
AGTGGCATCGTGTTGCATTGTACGGAAAACTGGCTGAAGTAGCAGGTGAGTACCTACGTAAAGGCTCTCAAGTTTATATC
GAAGGTCAACTACAGACGCGTAAGTGGCAAGACCAAAGCGGTCAAGATCGCTACACAACAGAAGTCGTAGTTCAAGGTTA
TAACGGCATTATGCAAATGCTAGGTGGCCGTCAAGGCGGTGGTGCTCCAGCTGGTGGTATGCAACAGCAACAACCACAAC
AGCAAGGTGGATGGGGACAACCTCAACAACCTGCAATGCAGCATCAGCCACAGTACCAATCTGCACCTGCACAACAATCT
CAGCCAGCGCCTCAATACAATGAGCCGCCAATGGATTTCGACGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

87.293

100

0.883
  ssb Glaesserella parasuis strain SC1401

53.158

100

0.564
  ssb Neisseria meningitidis MC58

51.124

99.441

0.508
  ssb Neisseria gonorrhoeae MS11

51.124

99.441

0.508

Multiple sequence alignment