Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABQY64_RS16285 Genome accession   NZ_CP168194
Coordinates   3905149..3906207 (-) Length   352 a.a.
NCBI ID   WP_039423791.1    Uniprot ID   -
Organism   Xanthomonas sp. WHRI 7065     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3900149..3911207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQY64_RS16265 (ABQY64_016265) - 3901227..3903164 (-) 1938 WP_349779483.1 type IV pilus secretin PilQ family protein -
  ABQY64_RS16270 (ABQY64_016270) - 3903184..3903717 (-) 534 WP_016903584.1 pilus assembly protein PilP -
  ABQY64_RS16275 (ABQY64_016275) - 3903714..3904379 (-) 666 WP_016903585.1 type 4a pilus biogenesis protein PilO -
  ABQY64_RS16280 (ABQY64_016280) - 3904376..3905149 (-) 774 WP_024938131.1 PilN domain-containing protein -
  ABQY64_RS16285 (ABQY64_016285) comM 3905149..3906207 (-) 1059 WP_039423791.1 pilus assembly protein PilM Machinery gene
  ABQY64_RS16290 (ABQY64_016290) - 3906326..3908848 (+) 2523 WP_349779545.1 penicillin-binding protein 1A -
  ABQY64_RS16295 (ABQY64_016295) - 3909063..3909713 (+) 651 WP_039525683.1 hypothetical protein -
  ABQY64_RS16300 (ABQY64_016300) - 3909816..3911105 (-) 1290 WP_024938127.1 citrate synthase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37622.21 Da        Isoelectric Point: 4.3924

>NTDB_id=1042998 ABQY64_RS16285 WP_039423791.1 3905149..3906207(-) (comM) [Xanthomonas sp. WHRI 7065]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDLEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALSRLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1042998 ABQY64_RS16285 WP_039423791.1 3905149..3906207(-) (comM) [Xanthomonas sp. WHRI 7065]
GTGGGGCTTCTACCCAAGAGTCAATCGCCACTGATTGGTGTCGATATCAGTTCCACTGCGGTCAAGCTCCTGCAGCTGTC
GCGCAGCGGGAACCGTTTCCGCGTGGAGCATTACGCGGTGGAACCGTTGCCGCCGAATGCGGTCGTGGAAAAGAACATCG
TCGAAGTCGAGGCGGTTGGCGAAGCGATTCGTCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCCGCGGCCGCG
GTGGCCGGGTCGGCGGTGATCACCAAGCTGATTCCGATGCCGGCTGATCTGGACGACAGCGATCTGGAAGCCCAGGTCGA
ACTGGAAGCCACCAATTACATTCCGTACCCGATCGAGGAAGTCAATCTCGACTTCGAGGTGCTCGGCCCGATGCCCAACA
GCCCGGACATGGTTCAGGTGCTGCTGGCGGCCTCGCGCTCGGAGAATGTGGAACTGCGCCAGTCCGCGCTGGAACTCGGT
GGCCTGACCGCCAAGGTCATGGACGTGGAGGCCTTCGCGGTCGAGAACGCCTTCGCCCTGGTCGCCAGCGAGTTGCCGGT
GGCCGCCGATGCGGTGGTTGCGCTGGTGGACATCGGCGCGACCATGACCACGCTGAGCGTGTTGCGCTCCGGTCGCAGCC
TGTATAGCCGCGAGCAGGTCTTCGGCGGCAAGCAGCTCACCGACGAGGTGATGCGCCGTTACGGGTTGACCTACGAGGAG
GCCGGCCTGGCCAAGCGTCAGGGCGGCTTGCCGGAGAGCTACGAGGTCGAAGTGCTGGAGCCGTTCAAGGAGGCGACGGT
GCAGCAGATCAGCCGTTTGCTGCAGTTCTTCTACGCGGGCAGCGAATTCAATCGCGTCGACTGCATCGTGCTGGCCGGCG
GCTGCGCTGCGCTGTCGCGCCTGCCGGAAATGGTGGAAGAACAGCTCGGCGTGACCACCGTGGTCGCCAACCCGCTCGCG
CAGATGACGCTGGGCCCGAAGGTCCAGGCGCATGCGCTGGCGCTGGATGCACCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter baylyi ADP1

51.282

99.716

0.511
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  pilM Acinetobacter baumannii D1279779

50.852

100

0.509
  pilM Legionella pneumophila strain ERS1305867

47.293

99.716

0.472

Multiple sequence alignment