Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   QOR55_RS01655 Genome accession   NZ_OX460911
Coordinates   276521..278506 (+) Length   661 a.a.
NCBI ID   WP_000141867.1    Uniprot ID   -
Organism   Streptococcus agalactiae isolate MRI Z2-322     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 271521..283506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOR55_RS01640 - 272852..273550 (+) 699 WP_000350768.1 MIP/aquaporin family protein -
  QOR55_RS01645 - 273638..274975 (+) 1338 WP_000137247.1 FAD/NAD(P)-binding oxidoreductase -
  QOR55_RS01650 - 274966..276396 (+) 1431 WP_001217278.1 helix-turn-helix domain-containing protein -
  QOR55_RS01655 recP/tkt 276521..278506 (+) 1986 WP_000141867.1 transketolase Machinery gene
  QOR55_RS01660 - 278719..279024 (+) 306 WP_000711207.1 bacteriocin immunity protein -
  QOR55_RS01665 pptA 279044..279778 (+) 735 WP_000589158.1 ABC transporter ATP-binding protein Regulator
  QOR55_RS01670 - 279782..281386 (+) 1605 WP_001104591.1 ABC transporter permease -
  QOR55_RS01675 - 281594..282979 (-) 1386 WP_000085849.1 PTS transporter subunit EIIC -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 71223.78 Da        Isoelectric Point: 4.5948

>NTDB_id=1042998 QOR55_RS01655 WP_000141867.1 276521..278506(+) (recP/tkt) [Streptococcus agalactiae isolate MRI Z2-322]
MTFDTIDQLAVNTVRTLSIDAIQAANSGHPGLPMGAAPMAYVLWNKFLNVNPKTSRNWTNRDRFVLSAGHGSALLYSLLH
LAGYDLSIDDLKQFRQWGSKTPGHPEVNHTDGVEATTGPLGQGIANAVGMAMAEAHLAAKFNKPGFDLVDHYTYTLHGDG
CLMEGVSQEAASLAGHLKLGKLVLLYDSNDISLDGPTSQSFTEDVKGRFESYGWQHILVKDGNDLEAIAAAIEAAKAETD
KPTIIEVKTIIGFGAEKQGTSSVHGAPLGAEGITFAKKAYGWEYPDFTVPAEVADRFASDLQARGAKAEEAWNDLFAKYE
VEYPELATEYKEAFAGQAETVELKAHDLGSSVASRVSSQQAIQQLSTQLPNLWGGSADLSASNNTMVAAETDFQASNYAG
RNIWFGVREFAMAAAMNGIALHGGTRVYGGTFFVFSNYLLPAVRMAALQNLPTVYVMTHDSIAVGEDGPTHEPIEQLASV
RSMPNLNVIRPADGNETNAAWQRAVSETDRPTMLVLTRQNLPVLEGTSELAQEGVNKGAYILSEAKGELDGIIIATGSEV
KLALDTQDKLESEGIHVRVVSMPAQNIFDEQEASYQEQVLPSSVTKRLAIEAGSSFGWGKYVGLNGLTLTIDTWGASAPG
NRIFEEYGFTVENAVSLYKEL

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=1042998 QOR55_RS01655 WP_000141867.1 276521..278506(+) (recP/tkt) [Streptococcus agalactiae isolate MRI Z2-322]
ATGACATTTGACACCATTGATCAATTAGCGGTTAATACAGTCCGCACGCTTTCTATTGATGCTATCCAAGCAGCAAATTC
TGGGCACCCAGGTCTTCCTATGGGAGCTGCGCCTATGGCTTATGTGCTTTGGAATAAATTCTTAAATGTAAACCCAAAAA
CAAGTCGCAATTGGACAAACCGTGACCGTTTTGTGCTATCAGCTGGGCATGGTTCAGCTCTTCTTTATAGCCTACTTCAT
TTAGCTGGCTATGATTTATCAATTGATGATTTAAAACAATTCCGCCAATGGGGATCAAAAACACCTGGACATCCAGAAGT
TAACCATACTGATGGTGTAGAAGCAACAACTGGACCTTTAGGGCAAGGTATTGCTAATGCTGTTGGTATGGCAATGGCTG
AAGCTCATTTGGCTGCTAAATTTAATAAACCAGGCTTTGATTTAGTTGATCATTACACTTATACACTTCATGGTGATGGT
TGTTTGATGGAGGGTGTTAGCCAAGAAGCTGCCAGTCTTGCTGGACACTTAAAACTTGGTAAATTGGTCCTTCTTTATGA
TTCAAATGATATCTCACTTGATGGTCCAACATCTCAATCATTTACAGAAGATGTTAAAGGACGTTTTGAATCATATGGTT
GGCAACATATCTTAGTTAAAGATGGTAATGATTTAGAAGCGATTGCTGCAGCAATTGAAGCTGCTAAAGCTGAAACTGAT
AAACCAACCATTATTGAAGTTAAAACTATTATTGGATTTGGCGCAGAGAAACAGGGAACATCTTCAGTTCATGGAGCGCC
ACTTGGTGCAGAAGGTATTACTTTTGCCAAGAAGGCTTATGGATGGGAATATCCAGACTTTACTGTTCCTGCTGAAGTTG
CAGATCGATTTGCCTCAGATCTTCAAGCGCGTGGTGCGAAGGCAGAAGAGGCATGGAATGATCTTTTTGCTAAATATGAA
GTTGAGTATCCAGAATTAGCAACTGAATACAAAGAAGCTTTTGCTGGCCAAGCTGAGACAGTTGAATTGAAAGCTCATGA
CCTAGGTTCATCAGTGGCTAGTCGTGTTTCAAGCCAACAAGCTATTCAACAATTATCGACTCAATTACCGAACCTCTGGG
GAGGGTCAGCAGACCTCTCAGCTTCTAATAACACAATGGTAGCAGCAGAAACAGATTTCCAAGCAAGTAACTACGCTGGG
CGTAACATTTGGTTTGGTGTACGTGAATTTGCAATGGCTGCTGCAATGAATGGAATTGCGCTTCACGGTGGGACTCGTGT
TTATGGGGGTACGTTCTTTGTCTTCTCAAACTACTTGTTACCAGCAGTACGTATGGCTGCACTTCAAAATTTGCCAACTG
TCTATGTTATGACACATGATTCTATTGCTGTTGGAGAAGATGGGCCAACTCATGAGCCAATAGAACAATTAGCATCAGTA
CGCTCAATGCCTAATTTGAACGTTATCCGTCCCGCAGACGGTAATGAAACAAACGCTGCATGGCAACGAGCTGTATCAGA
GACAGATCGACCAACGATGCTTGTTTTAACACGTCAAAACTTACCAGTTCTTGAAGGAACATCAGAATTAGCCCAAGAAG
GGGTTAATAAAGGTGCTTATATTTTATCAGAAGCTAAAGGTGAACTTGATGGTATCATCATTGCAACAGGTTCAGAAGTT
AAATTAGCTTTAGATACTCAAGACAAACTTGAGTCAGAGGGCATCCATGTTCGCGTCGTATCTATGCCAGCACAAAACAT
TTTTGATGAACAAGAGGCTTCATATCAAGAGCAAGTGCTTCCATCATCTGTTACAAAACGTCTTGCTATTGAGGCAGGAT
CAAGCTTCGGTTGGGGTAAATATGTTGGTTTAAATGGGCTAACACTTACTATTGATACTTGGGGAGCATCAGCACCAGGT
AACAGAATTTTCGAAGAGTATGGCTTTACAGTTGAGAATGCTGTATCGCTATATAAAGAACTTTAA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-522)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(6-337)

Transketolase, C-terminal domain (Transketolase_C)

(552-652)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

56.079

99.546

0.558

Multiple sequence alignment