Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABQY64_RS14310 Genome accession   NZ_CP168194
Coordinates   3412801..3413325 (-) Length   174 a.a.
NCBI ID   WP_016902371.1    Uniprot ID   A0A2N7V399
Organism   Xanthomonas sp. WHRI 7065     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3407801..3418325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQY64_RS14295 (ABQY64_014295) paoA 3408515..3409165 (-) 651 WP_024939376.1 aldehyde dehydrogenase iron-sulfur subunit PaoA -
  ABQY64_RS14300 (ABQY64_014300) - 3409718..3410725 (-) 1008 WP_104627523.1 NAD(P)-dependent alcohol dehydrogenase -
  ABQY64_RS14305 (ABQY64_014305) - 3410998..3412503 (+) 1506 WP_184352298.1 sensor domain-containing diguanylate cyclase -
  ABQY64_RS14310 (ABQY64_014310) ssb 3412801..3413325 (-) 525 WP_016902371.1 single-stranded DNA-binding protein Machinery gene
  ABQY64_RS14315 (ABQY64_014315) - 3413599..3414597 (+) 999 WP_024939379.1 polyprenyl synthetase family protein -
  ABQY64_RS14320 (ABQY64_014320) - 3414866..3415666 (-) 801 WP_039526227.1 dienelactone hydrolase family protein -
  ABQY64_RS14325 (ABQY64_014325) murD 3415822..3417231 (-) 1410 WP_349779820.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18789.66 Da        Isoelectric Point: 5.3095

>NTDB_id=1042989 ABQY64_RS14310 WP_016902371.1 3412801..3413325(-) (ssb) [Xanthomonas sp. WHRI 7065]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDRDGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGGMGGDRPQRSQAPRQQQGGGGGGQGGGQDYAPRRQQPAQQQS
APPMDDFADDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=1042989 ABQY64_RS14310 WP_016902371.1 3412801..3413325(-) (ssb) [Xanthomonas sp. WHRI 7065]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATCACGCGCGTGAGTCTGGCCACCACCAGCATGCGCAAGGACCGCGATGGCAACAACCAGGAGCGCACCGAGTGGC
ACCGCGTGGTGTTCTTCGGCAAGTTGGGCGAGATCGCCGGCGAGTACCTGCGCAAGGGCTCGCAGGTGTACGTCGAAGGC
GAGCTGCGTTACGACAAGTACACCGGCCAGGACGGCGTGGAGAAGTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGCGGCGAAGGCGGCGGTGGCGGCGGCATGGGCGGCGATCGTCCGCAGCGCAGCCAGGCGCCGCGCCAGC
AGCAAGGTGGTGGCGGTGGTGGTCAGGGCGGCGGTCAGGATTATGCCCCGCGTCGTCAGCAGCCGGCCCAGCAGCAGTCG
GCACCGCCGATGGACGATTTTGCCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7V399

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

46.703

100

0.489
  ssb Glaesserella parasuis strain SC1401

46.409

100

0.483
  ssb Neisseria meningitidis MC58

44.944

100

0.46
  ssb Neisseria gonorrhoeae MS11

44.944

100

0.46

Multiple sequence alignment