Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABQ014_RS02705 Genome accession   NZ_CP168178
Coordinates   648839..649897 (+) Length   352 a.a.
NCBI ID   WP_043909467.1    Uniprot ID   A0A0G8KJ77
Organism   Xanthomonas hortorum pv. hederae strain WHRI 7733A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 643839..654897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQ014_RS02690 (ABQ014_002690) - 643937..645226 (+) 1290 WP_104550599.1 citrate synthase -
  ABQ014_RS02695 (ABQ014_002695) - 645330..645980 (-) 651 WP_104550598.1 hypothetical protein -
  ABQ014_RS02700 (ABQ014_002700) - 646197..648623 (-) 2427 WP_273664125.1 penicillin-binding protein 1A -
  ABQ014_RS02705 (ABQ014_002705) comM 648839..649897 (+) 1059 WP_043909467.1 pilus assembly protein PilM Machinery gene
  ABQ014_RS02710 (ABQ014_002710) - 649897..650679 (+) 783 WP_104550596.1 PilN domain-containing protein -
  ABQ014_RS02715 (ABQ014_002715) - 650676..651341 (+) 666 WP_006451354.1 type 4a pilus biogenesis protein PilO -
  ABQ014_RS02720 (ABQ014_002720) - 651338..651871 (+) 534 WP_006451353.1 pilus assembly protein PilP -
  ABQ014_RS02725 (ABQ014_002725) - 651891..653843 (+) 1953 WP_074058175.1 type IV pilus secretin PilQ -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37624.24 Da        Isoelectric Point: 4.3882

>NTDB_id=1042912 ABQ014_RS02705 WP_043909467.1 648839..649897(+) (comM) [Xanthomonas hortorum pv. hederae strain WHRI 7733A]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVDHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDMEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLVAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALSRLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1042912 ABQ014_RS02705 WP_043909467.1 648839..649897(+) (comM) [Xanthomonas hortorum pv. hederae strain WHRI 7733A]
GTGGGGCTTCTACCCAAGAGTCAATCGCCACTGATTGGTGTCGATATCAGTTCCACTGCGGTCAAGCTCTTGCAGCTGTC
ACGTAGCGGGAATCGTTTTCGCGTGGATCATTACGCGGTCGAACCGTTGCCGCCGAACGCGGTCGTGGAAAAGAACATCG
TCGAAGTGGAGGCGGTGGGCGAAGCCATTCGCCGCGCCATCAATCGTTCCGGCAGCAAGGCCAAGAACGCGGCTGCGGCC
GTGGCCGGGTCGGCGGTGATCACCAAGCTGATCCCGATGCCGGCCGATCTGGACGACAGTGATATGGAGGCCCAGGTCGA
ACTCGAGGCCACCAATTACATTCCGTACCCGATCGAGGAAGTGAATCTCGATTTCGAAGTGCTCGGCCCGATGCCCAACA
GCCCGGACATGGTCCAGGTGCTGCTGGCTGCCTCGCGTTCGGAGAATGTGGAACTGCGCCAGTCCGCGCTGGAACTCGGT
GGGCTGGTTGCCAAGGTGATGGACGTGGAGGCCTTTGCGGTCGAAAACGCGTTTGCCCTGGTCGCCAGCGAGCTGCCGGT
GGCCGCCGATGCAGTGGTTGCGCTGGTGGACATCGGCGCGACCATGACCACGCTGAGCGTGCTGCGTTCCGGTCGCAGTC
TGTATAGCCGCGAGCAGGTGTTTGGCGGCAAGCAGCTCACCGATGAAGTGATGCGCCGTTACGGCCTTACCTATGAAGAA
GCCGGCCTGGCCAAGCGTCAGGGTGGTTTGCCGGAGAGCTACGAGGTCGAAGTGCTGGAGCCGTTCAAAGAGGCGACGGT
GCAGCAGATCAGCCGCCTGTTGCAGTTCTTCTACGCGGGCAGCGAATTCAATCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGCGCCGCGCTGTCGCGCCTGCCGGAGATGGTGGAAGAGCAGCTCGGCGTGACCACCGTGGTCGCGAACCCGCTTGCA
CAGATGACGCTCGGGCCGAAGGTTCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCATTGATGATTGCCACCGGCCTGGC
CCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0G8KJ77

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

50.852

100

0.509
  pilM Acinetobacter baumannii D1279779

50.568

100

0.506
  comM Acinetobacter baylyi ADP1

50.712

99.716

0.506
  pilM Legionella pneumophila strain ERS1305867

47.293

99.716

0.472

Multiple sequence alignment