Detailed information NTG1042911

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: ABQY58_RS20790
• Genome accession: NZ_CP168173
• Coordinates: 4752746..4753804 (-)
• Length: 352 a.a.
• NCBI ID: WP_043909467.1
• Uniprot ID: A0A0G8KJ77
• Organism: Xanthomonas hortorum pv. hederae strain WHRI 7734A
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4747746..4758804

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABQY58_RS20770 (ABQY58_020770)	-	4748800..4750752 (-)	1953	WP_074058175.1	type IV pilus secretin PilQ	-
ABQY58_RS20775 (ABQY58_020775)	-	4750772..4751305 (-)	534	WP_006451353.1	pilus assembly protein PilP	-
ABQY58_RS20780 (ABQY58_020780)	-	4751302..4751967 (-)	666	WP_006451354.1	type 4a pilus biogenesis protein PilO	-
ABQY58_RS20785 (ABQY58_020785)	-	4751964..4752746 (-)	783	WP_104550596.1	PilN domain-containing protein	-
ABQY58_RS20790 (ABQY58_020790)	comM	4752746..4753804 (-)	1059	WP_043909467.1	pilus assembly protein PilM	Machinery gene
ABQY58_RS20795 (ABQY58_020795)	-	4754020..4756446 (+)	2427	WP_273664125.1	penicillin-binding protein 1A	-
ABQY58_RS20800 (ABQY58_020800)	-	4756663..4757313 (+)	651	WP_104550598.1	hypothetical protein	-
ABQY58_RS20805 (ABQY58_020805)	-	4757417..4758706 (-)	1290	WP_349809706.1	citrate synthase	-

Sequence

Protein

• Length: 352 a.a.
• Molecular weight: 37624.24 Da
• Isoelectric Point: 4.3882

>NTDB_id=1042911 ABQY58_RS20790 WP_043909467.1 4752746..4753804(-) (comM) [Xanthomonas hortorum pv. hederae strain WHRI 7734A]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVDHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDMEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLVAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALSRLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide

• Length: 1059 bp

>NTDB_id=1042911 ABQY58_RS20790 WP_043909467.1 4752746..4753804(-) (comM) [Xanthomonas hortorum pv. hederae strain WHRI 7734A]
GTGGGGCTTCTACCCAAGAGTCAATCGCCACTGATTGGTGTCGATATCAGTTCCACTGCGGTCAAGCTCTTGCAGCTGTC
ACGTAGCGGGAATCGTTTTCGCGTGGATCATTACGCGGTCGAACCGTTGCCGCCGAACGCGGTCGTGGAAAAGAACATCG
TCGAAGTGGAGGCGGTGGGCGAAGCCATTCGCCGCGCCATCAATCGTTCCGGCAGCAAGGCCAAGAACGCGGCTGCGGCC
GTGGCCGGGTCGGCGGTGATCACCAAGCTGATCCCGATGCCGGCCGATCTGGACGACAGTGATATGGAGGCCCAGGTCGA
ACTCGAGGCCACCAATTACATTCCGTACCCGATCGAGGAAGTGAATCTCGATTTCGAAGTGCTCGGCCCGATGCCCAACA
GCCCGGACATGGTCCAGGTGCTGCTGGCTGCCTCGCGTTCGGAGAATGTGGAACTGCGCCAGTCCGCGCTGGAACTCGGT
GGGCTGGTTGCCAAGGTGATGGACGTGGAGGCCTTTGCGGTCGAAAACGCGTTTGCCCTGGTCGCCAGCGAGCTGCCGGT
GGCCGCCGATGCAGTGGTTGCGCTGGTGGACATCGGCGCGACCATGACCACGCTGAGCGTGCTGCGTTCCGGTCGCAGTC
TGTATAGCCGCGAGCAGGTGTTTGGCGGCAAGCAGCTCACCGATGAAGTGATGCGCCGTTACGGCCTTACCTATGAAGAA
GCCGGCCTGGCCAAGCGTCAGGGTGGTTTGCCGGAGAGCTACGAGGTCGAAGTGCTGGAGCCGTTCAAAGAGGCGACGGT
GCAGCAGATCAGCCGCCTGTTGCAGTTCTTCTACGCGGGCAGCGAATTCAATCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGCGCCGCGCTGTCGCGCCTGCCGGAGATGGTGGAAGAGCAGCTCGGCGTGACCACCGTGGTCGCGAACCCGCTTGCA
CAGATGACGCTCGGGCCGAAGGTTCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCATTGATGATTGCCACCGGCCTGGC
CCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (13-351)

3D structure

• AlphaFold DB: A0A0G8KJ77

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Acinetobacter nosocomialis M2	50.852	100	0.509
pilM	Acinetobacter baumannii D1279779	50.568	100	0.506
comM	Acinetobacter baylyi ADP1	50.712	99.716	0.506
pilM	Legionella pneumophila strain ERS1305867	47.293	99.716	0.472