Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   QOR56_RS01430 Genome accession   NZ_OX460906
Coordinates   248282..248971 (+) Length   229 a.a.
NCBI ID   WP_283573717.1    Uniprot ID   -
Organism   Streptococcus agalactiae isolate MRI Z2-265     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 243282..253971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOR56_RS01395 - 243731..243850 (+) 120 Protein_222 helix-turn-helix domain-containing protein -
  QOR56_RS01400 rplM 244075..244521 (+) 447 WP_001867156.1 50S ribosomal protein L13 -
  QOR56_RS01405 rpsI 244542..244934 (+) 393 WP_000035940.1 30S ribosomal protein S9 -
  QOR56_RS01410 - 245044..246261 (-) 1218 WP_283572049.1 tyrosine-type recombinase/integrase -
  QOR56_RS01415 - 246333..246593 (-) 261 WP_001196071.1 helix-turn-helix domain-containing protein -
  QOR56_RS01420 - 246652..247680 (-) 1029 WP_283572050.1 replication initiation factor domain-containing protein -
  QOR56_RS01425 - 247683..248105 (-) 423 WP_000067972.1 hypothetical protein -
  QOR56_RS01430 comA 248282..248971 (+) 690 WP_283573717.1 ATP-binding cassette domain-containing protein Regulator
  QOR56_RS01435 - 248968..249705 (+) 738 WP_000812013.1 ABC transporter ATP-binding protein -
  QOR56_RS01440 - 249707..251614 (+) 1908 WP_000638297.1 FtsX-like permease family protein -
  QOR56_RS01445 - 251654..253216 (+) 1563 WP_283572053.1 hypothetical protein -
  QOR56_RS01450 - 253197..253802 (+) 606 WP_002982799.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25950.70 Da        Isoelectric Point: 7.0395

>NTDB_id=1042895 QOR56_RS01430 WP_283573717.1 248282..248971(+) (comA) [Streptococcus agalactiae isolate MRI Z2-265]
MLNGINLKVHSGEFVAIIGKSGSGKTTLAKMLLGYVSPSSGDITYNNILYSKIDKKDFRDISAFVSQDSPIFDGDVMYNI
SLGRESVSGEQVIETCKRVSIYDDIISMPMKFHTPLFRDNPSLSGGQKQRISLARELVTTPRILVLDEPTSALDVKTERI
IQKNVEALHCTRILVTHRLNTVEKADKILIMDNGKIIDYGNHHYLYKNNKDYCDLYDSYMNKYQEEEVK

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1042895 QOR56_RS01430 WP_283573717.1 248282..248971(+) (comA) [Streptococcus agalactiae isolate MRI Z2-265]
GTGTTAAATGGAATAAACCTAAAAGTCCATTCAGGAGAATTTGTTGCAATTATAGGGAAAAGTGGAAGTGGAAAGACAAC
TCTAGCTAAGATGTTGTTAGGCTATGTAAGTCCTAGTAGTGGAGACATCACATACAACAATATACTCTACTCTAAAATTG
ATAAAAAAGATTTTAGGGATATATCGGCTTTTGTATCTCAAGATTCTCCCATATTCGATGGGGATGTGATGTATAATATT
TCGCTAGGGAGAGAATCTGTTTCAGGAGAACAGGTTATTGAAACTTGTAAAAGGGTATCAATATATGACGATATCATAAG
TATGCCAATGAAGTTTCATACTCCACTTTTTCGAGATAATCCATCACTATCTGGGGGGCAAAAACAACGAATTTCTTTAG
CAAGAGAACTTGTAACTACCCCTAGAATCTTAGTTCTTGACGAACCGACATCAGCTTTAGATGTAAAAACTGAAAGAATA
ATCCAAAAAAATGTTGAGGCTTTACATTGTACGAGGATTTTGGTTACCCACAGACTTAATACAGTTGAAAAAGCTGATAA
GATTTTAATAATGGATAATGGCAAAATTATTGACTATGGAAACCATCATTATTTGTACAAAAATAATAAGGATTATTGTG
ACTTATATGACTCGTATATGAATAAATATCAGGAGGAAGAGGTAAAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(2-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus pneumoniae TIGR4

40.639

95.633

0.389
  comA Streptococcus pneumoniae Rx1

40.183

95.633

0.384
  comA Streptococcus pneumoniae D39

40.183

95.633

0.384
  comA Streptococcus pneumoniae R6

40.183

95.633

0.384
  comA Streptococcus mitis SK321

39.726

95.633

0.38
  comA Streptococcus mitis NCTC 12261

40.465

93.886

0.38
  comA/nlmT Streptococcus mutans UA159

39.45

95.197

0.376