Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABRP26_RS19290 Genome accession   NZ_CP168166
Coordinates   4146703..4147248 (-) Length   181 a.a.
NCBI ID   WP_013024173.1    Uniprot ID   A0A8A4K787
Organism   Pantoea ananatis strain WHRI 5854     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 4138218..4146548 4146703..4147248 flank 155


Gene organization within MGE regions


Location: 4138218..4147248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABRP26_RS19255 (ABRP26_019255) - 4138218..4138685 (-) 468 WP_349886339.1 ABC-three component system middle component 1 -
  ABRP26_RS19260 (ABRP26_019260) - 4138678..4140000 (-) 1323 WP_349886340.1 hypothetical protein -
  ABRP26_RS19265 (ABRP26_019265) - 4139997..4140956 (-) 960 WP_349886341.1 MBL fold metallo-hydrolase -
  ABRP26_RS19270 (ABRP26_019270) - 4141305..4141724 (-) 420 WP_349886342.1 hypothetical protein -
  ABRP26_RS19275 (ABRP26_019275) - 4141708..4143750 (-) 2043 WP_349886343.1 integrase -
  ABRP26_RS19280 (ABRP26_019280) - 4143743..4145302 (-) 1560 WP_349886344.1 site-specific integrase -
  ABRP26_RS19285 (ABRP26_019285) - 4145289..4146548 (-) 1260 WP_349886345.1 site-specific integrase -
  ABRP26_RS19290 (ABRP26_019290) ssb 4146703..4147248 (-) 546 WP_013024173.1 single-stranded DNA-binding protein SSB1 Machinery gene

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19611.52 Da        Isoelectric Point: 5.2456

>NTDB_id=1042877 ABRP26_RS19290 WP_013024173.1 4146703..4147248(-) (ssb) [Pantoea ananatis strain WHRI 5854]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGENKEITEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWQDQGGQERYTTEVVVNVGGTMQMLGGRQQGGNAPAAGGGQGNNNGWGQPQQPQQANNNQFSGGAQSRPQQQ
PSAPASNNNEPPMDFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=1042877 ABRP26_RS19290 WP_013024173.1 4146703..4147248(-) (ssb) [Pantoea ananatis strain WHRI 5854]
ATGGCCAGTCGTGGCGTTAACAAAGTGATTCTTGTCGGGAATCTGGGTCAGGATCCGGAAGTACGTTACATGCCAAATGG
TGGCGCTGTCGCCAACATTACGCTGGCTACGTCGGAAAGCTGGCGCGATAAGCAGACCGGTGAAAACAAAGAAATCACTG
AATGGCACCGCGTAGTGCTGTTTGGCAAGCTGGCGGAAGTGGCGGGTGAATACCTGCGTAAAGGCTCTCAGGTCTATATT
GAAGGCCAGCTGCGTACCCGTAAATGGCAGGATCAGGGCGGCCAGGAACGTTACACCACCGAAGTCGTGGTTAACGTCGG
CGGCACCATGCAAATGTTGGGTGGACGTCAGCAGGGCGGTAACGCGCCAGCAGCAGGCGGCGGCCAGGGCAATAACAACG
GTTGGGGCCAGCCTCAGCAACCGCAGCAGGCGAACAACAACCAGTTTAGCGGTGGCGCGCAGTCTCGCCCGCAGCAGCAG
CCAAGCGCACCTGCCAGCAACAACAATGAACCACCGATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.283

100

0.735
  ssb Glaesserella parasuis strain SC1401

57.812

100

0.613
  ssb Neisseria meningitidis MC58

46.154

100

0.464
  ssb Neisseria gonorrhoeae MS11

46.154

100

0.464

Multiple sequence alignment