Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACCK26_RS10430 Genome accession   NZ_CP168160
Coordinates   2086616..2087086 (-) Length   156 a.a.
NCBI ID   WP_000934770.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CUBIST-33     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2081616..2092086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCK26_RS10355 (ACCK26_10355) rinB 2081819..2081968 (-) 150 WP_000595265.1 transcriptional activator RinB -
  ACCK26_RS10360 (ACCK26_10360) - 2081965..2082354 (-) 390 WP_001662395.1 hypothetical protein -
  ACCK26_RS10365 (ACCK26_10365) - 2082344..2082580 (-) 237 WP_000608278.1 hypothetical protein -
  ACCK26_RS10370 (ACCK26_10370) - 2082573..2082776 (-) 204 WP_001072794.1 hypothetical protein -
  ACCK26_RS10375 (ACCK26_10375) - 2082773..2082979 (-) 207 WP_000195812.1 DUF1381 domain-containing protein -
  ACCK26_RS10380 (ACCK26_10380) - 2083016..2083549 (-) 534 WP_001061843.1 dUTPase -
  ACCK26_RS10385 (ACCK26_10385) - 2083564..2083725 (-) 162 WP_000889682.1 hypothetical protein -
  ACCK26_RS10390 (ACCK26_10390) - 2083855..2084007 (-) 153 WP_016170781.1 hypothetical protein -
  ACCK26_RS10395 (ACCK26_10395) - 2084008..2084181 (-) 174 WP_000028424.1 hypothetical protein -
  ACCK26_RS10400 (ACCK26_10400) - 2084171..2084422 (-) 252 WP_001065046.1 DUF1024 family protein -
  ACCK26_RS10405 (ACCK26_10405) - 2084437..2084679 (-) 243 WP_000131381.1 phi PVL orf 51-like protein -
  ACCK26_RS10410 (ACCK26_10410) - 2084683..2085051 (-) 369 WP_000101270.1 SA1788 family PVL leukocidin-associated protein -
  ACCK26_RS10415 (ACCK26_10415) - 2085064..2085468 (-) 405 WP_000401964.1 RusA family crossover junction endodeoxyribonuclease -
  ACCK26_RS10420 (ACCK26_10420) - 2085477..2085695 (-) 219 WP_000338528.1 hypothetical protein -
  ACCK26_RS10425 (ACCK26_10425) - 2085702..2086586 (-) 885 WP_064127292.1 DnaD domain protein -
  ACCK26_RS10430 (ACCK26_10430) ssbA 2086616..2087086 (-) 471 WP_000934770.1 single-stranded DNA-binding protein Machinery gene
  ACCK26_RS10435 (ACCK26_10435) - 2087087..2087704 (-) 618 WP_072460574.1 MBL fold metallo-hydrolase -
  ACCK26_RS10440 (ACCK26_10440) - 2087785..2088705 (-) 921 WP_373334196.1 recombinase RecT -
  ACCK26_RS10445 (ACCK26_10445) - 2088707..2090662 (-) 1956 WP_064127293.1 AAA family ATPase -
  ACCK26_RS10450 (ACCK26_10450) - 2090637..2090921 (-) 285 WP_372487372.1 hypothetical protein -
  ACCK26_RS10455 (ACCK26_10455) - 2090930..2091190 (-) 261 WP_000291488.1 DUF1108 family protein -
  ACCK26_RS10460 (ACCK26_10460) - 2091283..2091444 (-) 162 WP_000066011.1 DUF1270 domain-containing protein -
  ACCK26_RS10465 (ACCK26_10465) - 2091441..2091761 (-) 321 WP_001120936.1 DUF771 domain-containing protein -
  ACCK26_RS10470 (ACCK26_10470) - 2091815..2091970 (+) 156 Protein_2025 hypothetical protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17713.63 Da        Isoelectric Point: 5.2672

>NTDB_id=1042846 ACCK26_RS10430 WP_000934770.1 2086616..2087086(-) (ssbA) [Staphylococcus aureus strain CUBIST-33]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANVPIEIDDNDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=1042846 ACCK26_RS10430 WP_000934770.1 2086616..2087086(-) (ssbA) [Staphylococcus aureus strain CUBIST-33]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGTTCCGATTGAAATAGATGACAATGATTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.367

100

0.628
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.551
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

67.949

0.404
  ssb Glaesserella parasuis strain SC1401

32.203

100

0.365

Multiple sequence alignment