Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACCK24_RS10195 Genome accession   NZ_CP168154
Coordinates   2055479..2055949 (-) Length   156 a.a.
NCBI ID   WP_000934759.1    Uniprot ID   A0A2I7Y8V1
Organism   Staphylococcus aureus strain CUBIST-6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2050479..2060949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCK24_RS10130 (ACCK24_10130) - 2050896..2051297 (-) 402 WP_000286968.1 hypothetical protein -
  ACCK24_RS10135 (ACCK24_10135) rinB 2051298..2051471 (-) 174 WP_000595244.1 transcriptional activator RinB -
  ACCK24_RS10140 (ACCK24_10140) - 2051471..2051854 (-) 384 WP_031773521.1 phage protein -
  ACCK24_RS10145 (ACCK24_10145) - 2051851..2052057 (-) 207 WP_000195803.1 DUF1381 domain-containing protein -
  ACCK24_RS10150 (ACCK24_10150) - 2052054..2052299 (-) 246 WP_001282074.1 hypothetical protein -
  ACCK24_RS10155 (ACCK24_10155) - 2052336..2052872 (-) 537 WP_001066447.1 dUTP diphosphatase -
  ACCK24_RS10160 (ACCK24_10160) - 2052865..2053035 (-) 171 WP_000714403.1 hypothetical protein -
  ACCK24_RS10165 (ACCK24_10165) - 2053022..2053276 (-) 255 WP_001065097.1 DUF1024 family protein -
  ACCK24_RS10170 (ACCK24_10170) - 2053291..2053533 (-) 243 WP_000131370.1 SAV1978 family virulence-associated passenger protein -
  ACCK24_RS10175 (ACCK24_10175) - 2053537..2053905 (-) 369 WP_000101288.1 SA1788 family PVL leukocidin-associated protein -
  ACCK24_RS10180 (ACCK24_10180) - 2053918..2054322 (-) 405 WP_000401960.1 RusA family crossover junction endodeoxyribonuclease -
  ACCK24_RS10185 (ACCK24_10185) - 2054331..2054549 (-) 219 WP_000338530.1 hypothetical protein -
  ACCK24_RS10190 (ACCK24_10190) - 2054556..2055449 (-) 894 WP_000148333.1 DnaD domain-containing protein -
  ACCK24_RS10195 (ACCK24_10195) ssbA 2055479..2055949 (-) 471 WP_000934759.1 single-stranded DNA-binding protein Machinery gene
  ACCK24_RS10200 (ACCK24_10200) - 2055950..2056567 (-) 618 WP_064135358.1 MBL fold metallo-hydrolase -
  ACCK24_RS10205 (ACCK24_10205) - 2056648..2057568 (-) 921 WP_000138475.1 recombinase RecT -
  ACCK24_RS10210 (ACCK24_10210) - 2057570..2059525 (-) 1956 WP_373333108.1 AAA family ATPase -
  ACCK24_RS10215 (ACCK24_10215) - 2059522..2059785 (-) 264 WP_001205732.1 hypothetical protein -
  ACCK24_RS10220 (ACCK24_10220) - 2059794..2060054 (-) 261 WP_000291089.1 DUF1108 family protein -
  ACCK24_RS10225 (ACCK24_10225) - 2060148..2060309 (-) 162 WP_373333109.1 DUF1270 family protein -
  ACCK24_RS10230 (ACCK24_10230) - 2060302..2060523 (-) 222 WP_000594789.1 hypothetical protein -
  ACCK24_RS10235 (ACCK24_10235) - 2060594..2060824 (+) 231 WP_000395455.1 hypothetical protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17641.52 Da        Isoelectric Point: 5.2672

>NTDB_id=1042713 ACCK24_RS10195 WP_000934759.1 2055479..2055949(-) (ssbA) [Staphylococcus aureus strain CUBIST-6]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=1042713 ACCK24_RS10195 WP_000934759.1 2055479..2055949(-) (ssbA) [Staphylococcus aureus strain CUBIST-6]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I7Y8V1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.932

100

0.635
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.551
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

67.949

0.404
  ssb Glaesserella parasuis strain SC1401

32.203

100

0.365

Multiple sequence alignment