Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   O0236_RS00365 Genome accession   NZ_CP168151
Coordinates   80449..80940 (+) Length   163 a.a.
NCBI ID   WP_268912201.1    Uniprot ID   -
Organism   Lentilactobacillus terminaliae strain SPB1-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 75449..85940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O0236_RS00355 (O0236_000355) gyrA 77454..79928 (+) 2475 WP_372791769.1 DNA gyrase subunit A -
  O0236_RS00360 (O0236_000360) rpsF 80117..80413 (+) 297 WP_268912200.1 30S ribosomal protein S6 -
  O0236_RS00365 (O0236_000365) ssb 80449..80940 (+) 492 WP_268912201.1 single-stranded DNA-binding protein Machinery gene
  O0236_RS00370 (O0236_000370) rpsR 80976..81212 (+) 237 WP_268912202.1 30S ribosomal protein S18 -
  O0236_RS00375 (O0236_000375) - 81349..83361 (+) 2013 WP_268912203.1 DHH family phosphoesterase -
  O0236_RS00380 (O0236_000380) rplI 83393..83845 (+) 453 WP_268912204.1 50S ribosomal protein L9 -
  O0236_RS00385 (O0236_000385) dnaB 83994..85379 (+) 1386 WP_268912205.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17901.43 Da        Isoelectric Point: 4.5657

>NTDB_id=1042657 O0236_RS00365 WP_268912201.1 80449..80940(+) (ssb) [Lentilactobacillus terminaliae strain SPB1-3]
MLNRAMLTGRLTRDVDLRYTQSGTAVGTFTLAVDRQFTNQQGEREADFINCVIWRKSAENFANFVHKGSLVGIDGRIQTR
NYENQQGQRVYVTEVVVENFALLEPRSNRDNNNQGAPQGGNAPQQGNGNPFGNTSNNSNSSAPADPFANSGDSIDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=1042657 O0236_RS00365 WP_268912201.1 80449..80940(+) (ssb) [Lentilactobacillus terminaliae strain SPB1-3]
ATGCTAAACAGAGCAATGTTAACGGGACGCCTAACCCGCGATGTTGATTTACGATACACTCAAAGTGGAACAGCTGTAGG
TACATTTACACTTGCAGTTGATCGCCAGTTTACAAATCAACAAGGTGAACGTGAGGCAGATTTCATTAACTGCGTTATCT
GGCGTAAATCCGCTGAAAATTTTGCCAACTTCGTTCATAAAGGATCTTTGGTTGGAATTGATGGTCGTATTCAGACTAGA
AATTATGAAAATCAACAAGGTCAGCGAGTTTATGTAACTGAAGTTGTGGTTGAAAACTTTGCATTATTAGAGCCACGGTC
AAACCGTGACAACAACAATCAAGGTGCACCACAAGGTGGCAATGCTCCTCAACAAGGCAATGGAAATCCATTTGGGAATA
CTTCAAATAACAGTAACAGTTCTGCACCAGCAGATCCGTTTGCTAATTCTGGAGACTCAATTGATATTTCCGATGACGAT
TTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

67.059

100

0.699
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.302

100

0.626
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

65.031

0.374
  ssb Vibrio cholerae strain A1552

33.714

100

0.362

Multiple sequence alignment