Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AB9L16_RS23025 | Genome accession | NZ_CP168138 |
| Coordinates | 5087005..5087526 (-) | Length | 173 a.a. |
| NCBI ID | WP_041477666.1 | Uniprot ID | A0A5E7PLF6 |
| Organism | Pseudomonas sp. LW8 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 5082005..5092526
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB9L16_RS22995 (AB9L16_22995) | - | 5082337..5082918 (+) | 582 | WP_225914461.1 | YjfI family protein | - |
| AB9L16_RS23000 (AB9L16_23000) | - | 5082936..5083634 (+) | 699 | WP_016772954.1 | PspA/IM30 family protein | - |
| AB9L16_RS23005 (AB9L16_23005) | - | 5083843..5084493 (+) | 651 | WP_375122762.1 | DUF2491 family protein | - |
| AB9L16_RS23010 (AB9L16_23010) | - | 5084509..5084934 (+) | 426 | WP_016772952.1 | DUF350 domain-containing protein | - |
| AB9L16_RS23015 (AB9L16_23015) | - | 5084953..5085651 (+) | 699 | WP_375122763.1 | DUF1190 domain-containing protein | - |
| AB9L16_RS23020 (AB9L16_23020) | - | 5085653..5086810 (+) | 1158 | WP_252876986.1 | glutathionylspermidine synthase family protein | - |
| AB9L16_RS23025 (AB9L16_23025) | ssb | 5087005..5087526 (-) | 522 | WP_041477666.1 | single-stranded DNA-binding protein | Machinery gene |
| AB9L16_RS23030 (AB9L16_23030) | - | 5087536..5088933 (-) | 1398 | WP_041477665.1 | MFS transporter | - |
| AB9L16_RS23035 (AB9L16_23035) | uvrA | 5089125..5091959 (+) | 2835 | WP_039761937.1 | excinuclease ABC subunit UvrA | - |
| AB9L16_RS23040 (AB9L16_23040) | bfr | 5092025..5092492 (-) | 468 | WP_016772947.1 | bacterioferritin | - |
Sequence
Protein
Download Length: 173 a.a. Molecular weight: 19243.38 Da Isoelectric Point: 5.9314
>NTDB_id=1042512 AB9L16_RS23025 WP_041477666.1 5087005..5087526(-) (ssb) [Pseudomonas sp. LW8]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQQAPRQQAPRPQQSAPQQRSAPQAPQQAAPQP
APDFDSFDDDIPF
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQQAPRQQAPRPQQSAPQQRSAPQAPQQAAPQP
APDFDSFDDDIPF
Nucleotide
Download Length: 522 bp
>NTDB_id=1042512 AB9L16_RS23025 WP_041477666.1 5087005..5087526(-) (ssb) [Pseudomonas sp. LW8]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACCTGCCTAACGGTAA
TGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAATGGACCGACAAGCAGACCGGTCAGAAGGTCGAGAAAACCGAGT
GGCACCGTGTGTCGATGTTCGGCAAGGTTGCCGAGATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAA
GGCAAGTTGCAGACCCGCGAGTGGGAAAAGGACGGCATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTCGGCGGCCGTCCACAACAGGGCGACCAGCAAGGCGGCGGCAACAACTACCAGCAGCAGGCGCCACGTC
AGCAGGCACCGCGCCCGCAGCAGTCGGCTCCACAGCAGCGTTCGGCTCCGCAAGCACCGCAGCAGGCCGCACCGCAACCG
GCTCCGGATTTCGACAGCTTCGATGACGATATTCCGTTCTGA
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACCTGCCTAACGGTAA
TGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAATGGACCGACAAGCAGACCGGTCAGAAGGTCGAGAAAACCGAGT
GGCACCGTGTGTCGATGTTCGGCAAGGTTGCCGAGATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAA
GGCAAGTTGCAGACCCGCGAGTGGGAAAAGGACGGCATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTCGGCGGCCGTCCACAACAGGGCGACCAGCAAGGCGGCGGCAACAACTACCAGCAGCAGGCGCCACGTC
AGCAGGCACCGCGCCCGCAGCAGTCGGCTCCACAGCAGCGTTCGGCTCCGCAAGCACCGCAGCAGGCCGCACCGCAACCG
GCTCCGGATTTCGACAGCTTCGATGACGATATTCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
58.47 |
100 |
0.618 |
| ssb | Glaesserella parasuis strain SC1401 |
48.066 |
100 |
0.503 |
| ssb | Neisseria meningitidis MC58 |
48.066 |
100 |
0.503 |
| ssb | Neisseria gonorrhoeae MS11 |
48.066 |
100 |
0.503 |