Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   AB9L16_RS22015 Genome accession   NZ_CP168138
Coordinates   4869548..4870894 (+) Length   448 a.a.
NCBI ID   WP_375122703.1    Uniprot ID   -
Organism   Pseudomonas sp. LW8     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4864548..4875894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9L16_RS21990 (AB9L16_21990) pgeF 4864762..4865484 (-) 723 WP_095181838.1 peptidoglycan editing factor PgeF -
  AB9L16_RS21995 (AB9L16_21995) rluD 4865481..4866443 (-) 963 WP_016773140.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AB9L16_RS22000 (AB9L16_22000) - 4866595..4867611 (+) 1017 WP_375122702.1 outer membrane protein assembly factor BamD -
  AB9L16_RS22005 (AB9L16_22005) - 4867739..4867972 (+) 234 WP_056790465.1 PP0621 family protein -
  AB9L16_RS22010 (AB9L16_22010) pilS 4867962..4869551 (+) 1590 WP_305381549.1 PAS domain-containing sensor histidine kinase Regulator
  AB9L16_RS22015 (AB9L16_22015) pilR 4869548..4870894 (+) 1347 WP_375122703.1 sigma-54-dependent transcriptional regulator Regulator
  AB9L16_RS22020 (AB9L16_22020) thiO 4870987..4872087 (-) 1101 WP_252878916.1 glycine oxidase ThiO -
  AB9L16_RS22025 (AB9L16_22025) - 4872145..4872546 (-) 402 WP_375122704.1 type IV pilin protein -
  AB9L16_RS22030 (AB9L16_22030) - 4872562..4875651 (-) 3090 WP_375122705.1 pilus assembly protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 50139.42 Da        Isoelectric Point: 6.2623

>NTDB_id=1042510 AB9L16_RS22015 WP_375122703.1 4869548..4870894(+) (pilR) [Pseudomonas sp. LW8]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLETFSARNLGEAQALLQREHFDLCLTDMRLPDGTGLELVQHIQQRDPNLP
VAMITAYGSLETAINALKAGAFDFLTKPVELPRLRELVSSALRLPTAGGLSTAIERRLLGDSPPMANLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAHGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLEAEVSAERFRQDLYYRLNVIELRVPSLRERRDDIEALA
MHVLKRLAKDTGQPEARLHPQALEALKNYRFPGNVRELENVLERAHTLCENRTIEAQDLRLSEGNCTADGAMADLTQVDN
LEDYLESVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=1042510 AB9L16_RS22015 WP_375122703.1 4869548..4870894(+) (pilR) [Pseudomonas sp. LW8]
TTGAATACAAGCCCACGGCAAAAAATTCTAATCGTCGACGACGAACCGGATATCCGCGAGCTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGAGACCTTCAGCGCACGCAATCTGGGCGAGGCTCAGGCGCTGTTGCAGCGCGAGCACTTTGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACCGGGCTGGAGCTGGTGCAACACATTCAGCAACGCGATCCAAACCTGCCA
GTGGCGATGATCACTGCGTACGGAAGCCTGGAAACGGCCATCAATGCATTGAAGGCCGGGGCGTTCGATTTCCTCACCAA
ACCGGTGGAGCTGCCGCGCCTGCGTGAACTGGTCAGCTCGGCGCTGCGCCTGCCGACAGCGGGCGGCTTGAGCACGGCAA
TCGAGCGACGCTTGCTGGGCGATTCGCCGCCGATGGCCAATCTGCGCAAGCAGATCGACAAGCTCGCACGCAGTCAGGCG
CCGGTGTACATCAGTGGTGAATCCGGCAGCGGCAAAGAACTGGTCGCGCGTCTGATTCACGAACAAGGCCCGCGCGCCAG
CCAGCCGTTTGTGCCGGTGAACTGCGGGGCAATTCCGTCGGAACTGATGGAAAGCGAATTTTTCGGCCACCGCAAAGGCA
GCTTCACCGGTGCCGTCGAAGACAAGCCGGGGCTATTCCAGGCGGCCCATGGCGGCACTCTGTTTCTCGATGAAGTCGCC
GACCTGCCGCTGTCGATGCAGGTAAAACTGCTGCGGGCGATTCAGGAAAAAGCCGTGCGCAGCGTCGGCGGCCAGCAAGA
AACGGTGGTCGACGTACGCATCCTTTGCGCCACGCACAAAGACCTTGAAGCCGAAGTTTCGGCCGAACGCTTCCGCCAGG
ATCTGTATTACCGGCTCAACGTCATCGAACTGCGCGTGCCGTCCCTGCGCGAACGCCGCGACGACATCGAGGCGCTTGCC
ATGCACGTACTCAAGCGCCTGGCCAAAGACACCGGACAACCCGAAGCGCGCCTGCACCCGCAAGCGCTGGAGGCGCTGAA
GAACTATCGCTTTCCCGGCAACGTGCGCGAACTGGAGAATGTTCTCGAACGCGCGCACACCTTGTGTGAAAACCGCACGA
TCGAAGCGCAGGATCTGCGTTTGAGCGAAGGCAATTGCACGGCGGATGGCGCGATGGCCGATCTGACGCAGGTCGACAAT
CTTGAGGATTATCTGGAGAGCGTCGAGAGGAAGCTGATTTTGCAGGCGCTGGAGGAAACCCGCTGGAACCGCACGGCGGC
GGCGCAGCGGTTGAGTCTGTCGTTCAGGTCGATGCGTTATCGGCTGAAGAAATTGGGACTGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-118)

Sigma-54 interaction domain (Sigma54_activat)

(139-304)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

78.104

98.884

0.772
  pilR Acinetobacter baumannii strain A118

49.673

100

0.509
  luxO Vibrio cholerae strain A1552

40.098

91.295

0.366

Multiple sequence alignment